Pairwise Alignments

Query, 443 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 278 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score = 87.0 bits (214), Expect = 6e-22
 Identities = 64/238 (26%), Positives = 107/238 (44%), Gaps = 21/238 (8%)

Query: 77  RQGKTVIIEIAAHGSSTGFTALKKSTADLAASSRPIKDSELVDLEPLGDLKSPEAEQVIA 136
           +Q     + +   GS+ G + LKK  AD+A +SR + +SE          ++      +A
Sbjct: 49  QQHPETYVAVQGVGSTAGISLLKKGVADIAMTSRYLTESEA---------QNTLHTFTLA 99

Query: 137 IDGLAIILHPQNPLNTLNTEQLAQVFNGEISTWEALGGVGGPIHVYARDDQSGTYDTFKE 196
            DGLAI+++  NP+  L  EQL  ++ G+I+ W+ +GG    I V  R+  SGT  +F+ 
Sbjct: 100 FDGLAIVVNQANPVTNLTREQLYGIYKGQITNWKQVGGNDQKIAVVTREASSGTRYSFES 159

Query: 197 L------VLRLRGKSLASGATRFESSEQLSDSVSQDPQGIGFIGLPYV-RQAKAVAIVDG 249
           L      V       +A  A    S+  +   V+ + Q +GFI +  V +  KA+     
Sbjct: 160 LMGLTKTVKDREVSDVAPTALVVNSNSMMKTLVNHNTQAVGFISIGSVDKSVKAIQFEKA 219

Query: 250 DSHPMLPLNSLIATEDYPLSRRLFFYLPPSSRNPWAKALVDFSQSSKGQAIVAANGFI 307
           D     P +  IA   Y LSR         + +   K  + F +S   + ++   G+I
Sbjct: 220 D-----PTSDNIAKHTYQLSRPFLILHYSDNADEQTKEFIAFLKSESAKKLIVEYGYI 272