Pairwise Alignments

Query, 575 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 612 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  287 bits (734), Expect = 1e-81
 Identities = 197/590 (33%), Positives = 290/590 (49%), Gaps = 45/590 (7%)

Query: 26  LDVRVKPSNDALKANIEGYIGGVGDRDEEALLRFSRGAEEQARKAAQALGFYQPRIESD- 84
           L + V   ++AL+ NI  ++G + + + +    F    ++    A Q++G+Y   +  + 
Sbjct: 28  LRINVSGVDEALEKNIRAHLGSLPESEVQRRA-FLFNVQDSVDAALQSVGYYHGELNQNL 86

Query: 85  VKGGNNP-RLILTIDPGEPVHLRNVTIRVDGPAADLKAFRVPVSN-DLKSGAVLNHGHYE 142
           ++    P  L LT+ PGEP  +  V IR  G   +  AF   +    L+ G VLNHG+YE
Sbjct: 87  IRHDKGPWELTLTVSPGEPTRIDWVDIRFAGEMLNDAAFDTWLDGVSLRPGQVLNHGNYE 146

Query: 143 DAKRLIQNQASRYGFFSGRFTRQKLAVDPQAGVADIELIYDSGPRYTLGKVSFAGDTPFD 202
           + K  +   A   G+F G++T+ ++ V+     A I L +DS  RY LG VSF G T  D
Sbjct: 147 NLKAELGAIALSRGYFDGKYTKAEIRVNRDENRATISLHFDSSARYRLGDVSFEGHT-LD 205

Query: 203 EELLHRMVPFKSGTPYDSELIAELNQNLQASGFFEGVRVDAAPAASTNDIIPVAVRLETR 262
           E  L R++PF+  +PY +  ++ LN  LQ +G+F   +V      + N  IP+ V L+ R
Sbjct: 206 EGFLDRLIPFEHQSPYATRRLSALNSRLQETGYFRSTKVLPQLDKAENGEIPIKVELDNR 265

Query: 263 KPRTMGLGLGFSTDVG--------PRGKANWTRHWVNPQGHSYGWEAELSAPRQNVGLWY 314
              ++ LGLG   D+G        PR +  W    +N  GHS     E S  R      Y
Sbjct: 266 PDHSIELGLG--GDIGSSSDSTFEPRVRVTWRTPQINSHGHSQETSIEWSPDRPKFLTTY 323

Query: 315 DIPLDPPLTDKLRFAGG-----------YQNEEIANTDT---VSKLLTLGPEWHSKLPSG 360
            IPL  PL D+L+   G           Y+ E++   +T    S    LG      L  G
Sbjct: 324 TIPLTHPLDDQLKLRLGLLRDKYGVTQVYEPEDLDFRNTGQLESSKQLLGVLRQQSLGDG 383

Query: 361 WTRVISLKYQREEYRLGNDSGLSNLVMPGVSYS-YLRSDNRIDPHNGYRLQFDTKVAKEG 419
           W    SL + RE Y   +     + ++ G S S  +R D  +DP  GYR  +    A   
Sbjct: 384 WLMGYSLDFIRESYTQFDTDYSPSFLLAGFSLSNTVRGDATLDPKWGYRQSYSVDYADPS 443

Query: 420 LGSDTNLLYGTALVKGLTTLWDNHRFLARAQVGGS--ATNGYKSVPPSLRFFAGGDQSVR 477
           LGS T L    A  K + T +  HR +ARA  G +  +      VPPSLR+F GGDQS+R
Sbjct: 444 LGSATRLSRFQAKFKWIDTFFTKHRLVARADFGLNLVSDGDLALVPPSLRYFTGGDQSIR 503

Query: 478 GYEYQTLSP----ENDRG----DRVGGRYMVALSAEYQYSIAEKWRIATFIDQGNSFNNL 529
           GY +Q + P     ND G    + +GGRY+   S EYQY +   WR+ +F+D GN+F+  
Sbjct: 504 GYAFQEIGPYIEFTNDDGQIAREVIGGRYLAVGSLEYQYYLTPSWRLGSFVDAGNAFDK- 562

Query: 530 DLPSLKTGVGVGIRWVSPVGPIRLDLAHALEDPGGI----RLHFSMGPEL 575
           D       VG G+ W+SP+GPI+LDL   L +   +    R+H +MG EL
Sbjct: 563 DKFEPVVSVGGGVHWISPIGPIKLDLGVGLTETDTLERSWRIHLTMGSEL 612