Pairwise Alignments

Query, 575 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 618 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  309 bits (792), Expect = 2e-88
 Identities = 204/602 (33%), Positives = 302/602 (50%), Gaps = 45/602 (7%)

Query: 14  LFTSCGALAQSELDVRVKPSNDALKANIEGYIGGVGDRDEEALLRFSRGAEEQARKAAQA 73
           L TS    A + L + V   ++ALK NI  ++G + D + +    F    E+    A Q+
Sbjct: 22  LLTSVSLAADNVLTLSVNGVDEALKRNILAHLGAMPDSEVQRRA-FLFNVEDNVTTALQS 80

Query: 74  LGFYQPRIESD-VKGGNNP-RLILTIDPGEPVHLRNVTIRVDGPAADLKAFRVPVSN-DL 130
           +G+Y   +E   V+    P  L LT+  GEPV ++ V I   G   D +AF   +++ ++
Sbjct: 81  MGYYHGEVEDHLVEKDKGPWELTLTVKAGEPVKIQWVDINFSGEMLDDRAFDKWLADVNI 140

Query: 131 KSGAVLNHGHYEDAKRLIQNQASRYGFFSGRFTRQKLAVDPQAGVADIELIYDSGPRYTL 190
           K G  LNHG Y D K  +   A   G+F G FT  ++ ++     A I L ++SG RY  
Sbjct: 141 KPGDTLNHGMYSDVKSQLVTLALARGYFDGEFTESQIKINRDLNTAQISLHFNSGARYHF 200

Query: 191 GKVSFAGDTPFDEELLHRMVPFKSGTPYDSELIAELNQNLQASGFFEGVRVDAAPAASTN 250
           G+VSF G T  + ++L +++PFK    Y +  ++ LN+ L  +G+F  ++V      + +
Sbjct: 201 GQVSFEGHT-LEPDILTKLIPFKEDASYSTRRVSALNRQLLDTGYFSNIKVIPQLDLAKD 259

Query: 251 DIIPVAVRLETRKPRTMGLGLGFSTDVG--------PRGKANWTRHWVNPQGHSYGWEAE 302
           + +PV V L  +   ++ LGLG   D+G        PR +  W    +N  GHS     E
Sbjct: 260 NQLPVKVELTNKASHSIELGLG--GDIGQSSDKTFDPRVRVTWRTPQINKYGHSQETSLE 317

Query: 303 LSAPRQNVGLWYDIPLDPPLTDKLRFAGGYQ-------------NEEIANTDTV-SKLLT 348
            S  R      Y IPL  PL D+L+   G Q             N +  NT  + S    
Sbjct: 318 WSPDRPKFLTTYTIPLTHPLDDQLKIRLGLQRDKYGVTQIYEPENRDFRNTGQLESTKYL 377

Query: 349 LGPEWHSKLPSGWTRVISLKYQREEYRLGNDSGLSNLVMPGVSYS-YLRSDNRIDPHNGY 407
           LG     +L + W    SL   REEY   +     +  + G+++S   R DN +DP +GY
Sbjct: 378 LGLLRQQRLDNQWLMSYSLDAIREEYTQSDVDYNPSFYLAGINFSKTTRGDNSLDPKSGY 437

Query: 408 RLQFDTKVAKEGLGSDTNLLYGTALVKGLTTLWDNHRFLARAQVGGSATN--GYKSVPPS 465
           R  +    A   LGS+T L    A  K + T +DNHR +AR  +  +  N      +PPS
Sbjct: 438 RQTYSLDYADPYLGSETRLARLQAKFKWIDTFFDNHRIVARMDLAANLANEDELALIPPS 497

Query: 466 LRFFAGGDQSVRGYEYQTLSPENDRGDR--------VGGRYMVALSAEYQYSIAEKWRIA 517
           LR+FAGGDQ++RGY YQ L P  D  D         +GGRY++  S EYQY +   WR+A
Sbjct: 498 LRYFAGGDQTIRGYGYQELGPYLDYIDADGNVNREVIGGRYLMVGSVEYQYYVTPTWRVA 557

Query: 518 TFIDQGNSFNNLDLPSLKTGVGVGIRWVSPVGPIRLDLAHALEDPGGI----RLHFSMGP 573
           TF+D GN+F+N     +   VG GI W+SP+GPI+LDL   L++   I    R+H +MG 
Sbjct: 558 TFVDAGNAFDNNQFEPV-VSVGGGIHWISPIGPIKLDLGVGLKETDTIDRSWRIHLTMGT 616

Query: 574 EL 575
           EL
Sbjct: 617 EL 618