Pairwise Alignments

Query, 575 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 826 a.a., bacterial surface antigen (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 59.3 bits (142), Expect = 6e-13
 Identities = 116/574 (20%), Positives = 209/574 (36%), Gaps = 124/574 (21%)

Query: 93  LILTIDPGEPVHLRNVTIRVD--GPAADLKAFRVPVSNDLKSGAVLNHGHYEDAKRLIQN 150
           + + ++ GE   +++V +  D  G    +K+  +P+    K+G + N G    A+ +   
Sbjct: 261 ITINVNEGEKYKVKDVNLTGDLMGREELMKSI-LPI----KAGDMYNGGDVTFAEEMYSK 315

Query: 151 QASRYGFFSGRFTRQKLAVDPQAGVADIELIYDSGPRYTLGKVSFAGDTPFDEELLHRMV 210
              R+G+      +    +D +     + +    G R  +  ++F G+T  ++E++ R +
Sbjct: 316 YLGRFGYAYPE-VKTYPEIDDKTKEVTLNINIKPGKRVYVRSINFTGNTVTEDEVMRREL 374

Query: 211 PFKSGTPYDSELIAELNQNLQASGFFEGVRVDAAPAASTNDIIPVAVRLETRKPRTMGLG 270
               G   +S  + +    L   GFFE V  +      T+D++ VAV+++ +   +   G
Sbjct: 375 RQMEGAWLNSAQVEQSKARLNRLGFFETVDTETIQVPGTDDLVDVAVKVKEQPSGSFNAG 434

Query: 271 LGFSTDVGPRGKANWTRHWVNPQGHSYGWEAELSAPRQNVGLWYDIPLDPPLTDKLRFAG 330
           +G+ T+ G   +    ++     G+  G     +   +NV L Y    DP  T      G
Sbjct: 435 VGYGTESGLSLQFGVQQNNFLGTGNQAGVSLSTNKYSKNVNLSY---TDPYWTKDGVSLG 491

Query: 331 G--YQNEEIANTDTVS--KLLTLGPEWHSKLPSGWTRVISLKYQREE----YRLGNDSGL 382
           G  Y NE  AN   +   K  + G   +S  P         +Y R      YR    S +
Sbjct: 492 GSVYWNEFDANEANLERYKNSSYGVALNSGFPIN-------EYNRINGGIGYRHNTISEI 544

Query: 383 SNLVMPGVSYSYLRSDNRIDPHNGYRLQFDTKVAKEGLGSDTNLLYGTALVKG------- 435
           S        Y+  R D   DP+    L FD      G    T L  GT    G       
Sbjct: 545 SAYEQALRFYNIYRDD---DPNAD--LSFDNFELSLGWYRST-LNRGTFPTDGSSQRLSG 598

Query: 436 -----------LTTLWDNHRF-----------LARAQVG-----GSATNGYKSVPPSLRF 468
                        T +D + +           LAR ++G     G   +  + +P    +
Sbjct: 599 KMTVPASDLQYFKTDFDTNYYFPINRSQSFVLLARGRLGYGNGYGQYNDNDQILPFWENY 658

Query: 469 FAGGDQSVRGYEYQTLSPEN------------------------------DRGDRVGGRY 498
           ++GG  S+RG++  ++ P +                                G  +GG  
Sbjct: 659 YSGGSSSLRGFKSNSVGPRSFYLFRGSEPCSPDPSGDGCSLPGDPNKIQVSSGRSIGGNA 718

Query: 499 MVALSAE-------YQYSIAEKWRIATFIDQGN-----------------SFNNL----D 530
           +   S E          +     R + F+D GN                  F+ L    D
Sbjct: 719 IATASLELIVPTPFLDEAYTNSVRTSFFVDAGNVWDTEFDYAKYQTLPAEEFDKLQDYSD 778

Query: 531 LPSLKTGVGVGIRWVSPVGPIRLDLAHALEDPGG 564
              ++   GV ++W+SP+GP+   LA  +++  G
Sbjct: 779 PARIRASWGVSLQWLSPMGPMVFSLAWPVKEYEG 812



 Score = 32.3 bits (72), Expect = 8e-05
 Identities = 17/64 (26%), Positives = 31/64 (48%)

Query: 156 GFFSGRFTRQKLAVDPQAGVADIELIYDSGPRYTLGKVSFAGDTPFDEELLHRMVPFKSG 215
           G+     T  ++A+ P      I +  + G +Y +  V+  GD    EEL+  ++P K+G
Sbjct: 239 GYIRFEVTSTQVAMTPDRKGLYITINVNEGEKYKVKDVNLTGDLMGREELMKSILPIKAG 298

Query: 216 TPYD 219
             Y+
Sbjct: 299 DMYN 302