Pairwise Alignments

Query, 575 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 776 a.a., outer membrane protein, OMP85 family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  116 bits (290), Expect = 4e-30
 Identities = 113/426 (26%), Positives = 175/426 (41%), Gaps = 27/426 (6%)

Query: 163 TRQKLAVDPQAGVADIELIYDSGPRYTLGKVSFAGDTPFDEELLHRMVPFKSGTPYDSEL 222
           T  +  VD  A      +  D GP   +G +   G      + +   V ++ G P+D  L
Sbjct: 359 TGTRFEVDHAAHTLHATVTVDPGPYVLMGGLDVEGADDVSRDYVATYVGWRPGQPWDERL 418

Query: 223 IAELNQNLQASGFFEGVRVDAAPAASTNDIIPVAVRLETRKPRTMGLGLGFSTDVGPRGK 282
           +    ++L+ +G F G+ V  A         PV  RL    PR+ G GL + + +GP   
Sbjct: 419 VERFRESLRGTGLFSGMEVVPADHDDATGCRPVMARLTYGPPRSFGGGLRYDSALGPGVL 478

Query: 283 ANWTRHWVNPQGHSYGWEAELSAPRQNVGLWYDIP-LDPPLTDKLRFAGGYQNEEIANTD 341
           A W    +   G     E  +   RQ V   +  P L  P  D +  A   +NE     D
Sbjct: 479 AFWEHRNLWGGGERLRLELPVWERRQEVVASFRKPFLLRPDQDFIADAWA-RNENSDAYD 537

Query: 342 TVSKLLTLGPE-------WHSKLPSGWTRVISLKYQREEYRLGNDSGLSNLVMPGVSYSY 394
             +  ++   E       W S    G T   S+   +     G +   S   +P ++  Y
Sbjct: 538 QRAGAVSASVERRISRHLWASA--GGTTEGGSINDHQ-----GPERSYSMWGVP-LTIRY 589

Query: 395 LRSDNRIDPHNGYRLQFDTKVAKEGLGSDTNLLYGTALVKGLTTLWDNHRFLA-RAQVGG 453
             +DN +DPH G R    T           +++         T L      LA RA  G 
Sbjct: 590 DGTDNLLDPHEGVRAALSTTPYTGVYHEWRSMVRSRLDASAYTALPGGRTVLALRAAAGA 649

Query: 454 SATNGYKSVPPSLRFFAGGDQSVRGYEYQTLSPENDRGDRVGGRYMVALSAEYQYSIAEK 513
                   +P S RF++GG  SVRGY YQ+L P  D    +GG     +  E +  I E 
Sbjct: 650 LHGESPADIPASFRFYSGGGGSVRGYAYQSLGP-RDGDVPLGGGSFGEVGLEARTRITET 708

Query: 514 WRIATFIDQGNSFNNLDLP----SLKTGVGVGIRWVSPVGPIRLDLA---HALEDPGGIR 566
             + TF+D GN +    +P     ++ G GVG+R+ + +GP+R D+A   +  ED   ++
Sbjct: 709 LGLVTFVDGGNVYEE-SMPRFGDGMRFGAGVGLRYYTAIGPLRFDVATPVNPREDDAPLQ 767

Query: 567 LHFSMG 572
            +FS+G
Sbjct: 768 FYFSIG 773



 Score = 31.2 bits (69), Expect = 2e-04
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 61  RGAEEQARKAAQALGFYQPRIESDVKGGNNP-RLILTIDPG 100
           R  E++AR    + GFY  R+E  +   ++P R+ LT+ PG
Sbjct: 173 RSDEDEARNVLHSRGFYAGRVEGRLDAASSPLRVTLTLFPG 213