Pairwise Alignments

Query, 575 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 770 a.a., membrane protein from Burkholderia phytofirmans PsJN

 Score = 92.0 bits (227), Expect = 8e-23
 Identities = 114/506 (22%), Positives = 203/506 (40%), Gaps = 55/506 (10%)

Query: 93  LILTIDPGEPVHLRNVTIRVDGPAADLKAFRVPVSNDLKSGAVLNHGHYEDAKRLIQNQA 152
           L +T+  GEP  + N  I++ G   D +     +   +K G   +    +   + I ++ 
Sbjct: 262 LTVTLHEGEPYTISN--IKLAGNLLDREPELAKLIK-IKPGDRFSAEKLQATTKAIVDKL 318

Query: 153 SRYGFFSGRFTRQKLAVDPQAGVADIELIYDSGPRYTLGKVSFAGDTPFDEELLHRMVPF 212
             YG+       Q   +D      D+ L  D   R  + +++  G+T   +E++ R +  
Sbjct: 319 GEYGYAFATVNAQP-QIDQANHKVDLTLQVDPSRRVYVRRINVVGNTRTRDEVVRREMRQ 377

Query: 213 KSGTPYDSELIAELNQNLQASGFFEGVRVDAAPAASTNDIIPVAVRLETRKPRTMGLGLG 272
              + +DS  +A     +   G+F  V V   P   T D + V V++  +    + LG G
Sbjct: 378 LESSWFDSNRLALSKDRINRLGYFTDVDVTTVPVEGTPDQVDVDVKVAEKPTGAITLGAG 437

Query: 273 FSTDVGPRGKANWTRHWVNPQGHSYGWEAELSAPRQNVGLWYDIPLDPPLT-DKLR---- 327
           FS+       A  ++  V   G S       +   + + +     +DP  T D ++    
Sbjct: 438 FSSTDKVVLSAGVSQDNVFGSGTSLSVNVNTAKTYRTLTV---TQVDPYFTVDGIKRITD 494

Query: 328 -FAGGYQNEEIANTDTVSKLLTLGPEWHSKLPSGWTRVISLKYQREEYRLGNDSG----- 381
            +   YQ     +TD+  K++T+G +    +P      +      E+ +L  D+      
Sbjct: 495 VYYRTYQ-PLYYSTDSSFKIVTIGGDLKFGIPFSEVDTVYFGAGLEQNQLDVDANTPASY 553

Query: 382 ---------LSNLVMPGVSYSYLRSDNRIDPHNGYRLQFDTKVAKEGLGS------DTNL 426
                    +SN V   V +S    D+ + P  GY  Q + +     +GS      D N 
Sbjct: 554 RQYVQDFGRVSNNVPITVGWSRDARDSALVPSRGYFAQANAEYGTP-IGSTQYYKADINA 612

Query: 427 LYGTALVKGLTTLWDNHRFLARAQVGGSATNGYKSVPPSLRFFAGGDQSVRGYEYQTLSP 486
            Y  +  +G    ++        Q G     G K  P    ++AGG  SVRGYE  +L P
Sbjct: 613 QYYYSFARGFVLGFN-------FQGGYGKGMGGKPYPIFKNYYAGGIGSVRGYEPSSLGP 665

Query: 487 EN-DRGDRVGGRYMVALSAEYQYSIA-----EKWRIATFIDQGNSFNNLDLPSLKTGV-- 538
            +    D +GG  ++  + E  + +         R+ TF+D GN + +    +  TG   
Sbjct: 666 RDATTNDPIGGSKLLVGNIELTFPLPGTGYDRTLRVFTFLDAGNVWADASSAATSTGANG 725

Query: 539 -----GVGIRWVSPVGPIRLDLAHAL 559
                G+G+ W+SP+GP++L L   L
Sbjct: 726 LRYGYGIGLAWISPIGPLKLSLGFPL 751



 Score = 29.3 bits (64), Expect = 6e-04
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 9/85 (10%)

Query: 150 NQASRYGFFSGRFTRQKLAVDPQAGVADIELIYDSGPRYTLGKVSFAGDTPFDEELLH-- 207
           ++A R  + +G F   K+A +    +  +        R  +G + FAG   FD+E L   
Sbjct: 66  SEAIRALYATGFFNDVKIATEGNVVIVQVL------ERPAIGTIDFAGIHEFDKENLTKA 119

Query: 208 -RMVPFKSGTPYDSELIAELNQNLQ 231
            R V    G  YD  L+ +  Q L+
Sbjct: 120 LRAVGLSQGRYYDKALVDKAEQELK 144



 Score = 26.9 bits (58), Expect = 0.003
 Identities = 29/172 (16%), Positives = 64/172 (37%), Gaps = 18/172 (10%)

Query: 63  AEEQARKAAQALGFYQPRIESDVK--GGNNPRLILTIDPGEPVHLRNV-----------T 109
           AE++ ++     G+Y   + + +     N   ++  +  G    +R +           T
Sbjct: 139 AEQELKRQYLTRGYYAAEVTTTITPIDRNRVSVLFAVAEGPSAKIRQINFIGNKAFSTGT 198

Query: 110 IRVDGPAADLKAFRVPVSNDLKSGAVLNHGHYEDAKRLIQNQASRYGFFSGRFTRQKLAV 169
           +R +   +    F     NDL +   L  G  E+ +    N+    G+        ++++
Sbjct: 199 LRDEMQLSTPNWFSWYTKNDLYAKDKLT-GDLENVRSYYLNR----GYLEFNIESTQVSI 253

Query: 170 DPQAGVADIELIYDSGPRYTLGKVSFAGDTPFDEELLHRMVPFKSGTPYDSE 221
            P      + +    G  YT+  +  AG+    E  L +++  K G  + +E
Sbjct: 254 TPDKKDMYLTVTLHEGEPYTISNIKLAGNLLDREPELAKLIKIKPGDRFSAE 305



 Score = 25.4 bits (54), Expect = 0.009
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 210 VPFKSGTPYDSELIAELNQNLQASGFFEGVRV 241
           +P K G  +  +  +E  + L A+GFF  V++
Sbjct: 52  LPIKQGDTFSDDKASEAIRALYATGFFNDVKI 83