Pairwise Alignments

Query, 575 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 769 a.a., membrane protein from Burkholderia phytofirmans PsJN

 Score =  102 bits (254), Expect = 6e-26
 Identities = 114/494 (23%), Positives = 200/494 (40%), Gaps = 42/494 (8%)

Query: 93  LILTIDPGEPVHLRNVTIRVDGPAADLKAFRVPVSNDLKSGAVLNHGHYEDAKRLIQNQA 152
           L +T+  GEP  + ++ +   G   D +A    + N +K+G   +    +   + I ++ 
Sbjct: 264 LTVTLHEGEPYTIASIGLA--GNLLDREAELKKLVN-IKAGERFSAEKLQATTKAIVDKL 320

Query: 153 SRYGFFSGRFTRQKLAVDPQAGVADIELIYDSGPRYTLGKVSFAGDTPFDEELLHRMVPF 212
             YG+           +D Q    D+ L  D   R  +  ++  G+T   +E++ R +  
Sbjct: 321 GEYGYAFATVNAVP-KIDQQRHTVDLTLQVDPSRRVYVRHINVVGNTRTRDEVVRREMRQ 379

Query: 213 KSGTPYDSELIAELNQNLQASGFFEGVRVDAAPAASTNDIIPVAVRLETRKPRTMGLGLG 272
              + +DS  +      +   G+F  V V   P   + D + V V++  +    + LG G
Sbjct: 380 LESSWFDSNRLTLSKDRVNRLGYFTDVDVTTVPVEGSPDQVDVDVKVSEKPTGAITLGAG 439

Query: 273 FSTDVGPRGKANWTRHWVNPQGHSYGWEAELSAPRQNVGLWYDIPLDPPLT-DKL-RFAG 330
           FS+       A  ++  V   G S       +   + + +      DP  T D + R   
Sbjct: 440 FSSTDKVVLSAGVSQDNVFGSGTSLAVNVNTAKTYRTLTV---TQTDPYFTVDGIKRITD 496

Query: 331 GYQNEEIA---NTDTVSKLLTLGPEWHSKLPSGWTRVISLKYQREEYRLGNDSGLSNLVM 387
            Y          TDT  +++T+G +    +P      +      E+ RL  DS      +
Sbjct: 497 VYYRTSYPLYNYTDTSFRIITMGADLKFGIPFSEADTVYFGVGLEQNRLNTDSSTPQSYL 556

Query: 388 PGVS--------------YSYLRSDNRIDPHNGYRLQFDTKVAKEGLGSDTNLLYGTALV 433
             VS              ++    D+ + P  GY +Q + +V     G++    Y  A V
Sbjct: 557 DYVSEFGRVVNNVPLTTGWARDNRDSALVPSRGYFIQTNGEVGTPAGGTE----YYKADV 612

Query: 434 KGLTTLWDNHRFLARAQVGGSATNGY--KSVPPSLRFFAGGDQSVRGYEYQTLSP-ENDR 490
           +          F+    + G   NG+  K+ P    ++AGG  SVRGYE  +L P +   
Sbjct: 613 QAQYYYSFARGFILGLNLQGGYGNGFAGKAYPIFKNYYAGGIGSVRGYEAGSLGPTDKTT 672

Query: 491 GDRVGGRYMVALSAEYQYSI-AEKW----RIATFIDQGNSF----NNLDLPSLKTGVGVG 541
           GD +GG  MV  + E  + +    W    R+ TF+D GN +    N+     L+   G G
Sbjct: 673 GDPIGGSRMVVANVEMTFPLPGSGWDRTLRVFTFLDAGNVWGDEGNSTGANGLRYSYGAG 732

Query: 542 IRWVSPVGPIRLDL 555
           + W+SP+GP++L L
Sbjct: 733 LEWISPIGPLKLSL 746



 Score = 28.1 bits (61), Expect = 0.001
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 206 LHRMVPFKSGTPYDSELIAELNQNLQASGFFEGVRVDAAPAASTNDIIPVAVR 258
           L   +P K G  +  E  +E  + L A+GFF  VR+     ++  D + V+V+
Sbjct: 50  LFAYLPIKQGDTFSDEKASEAIRALYATGFFNEVRI-----STQGDTVVVSVQ 97



 Score = 27.3 bits (59), Expect = 0.002
 Identities = 35/172 (20%), Positives = 66/172 (38%), Gaps = 18/172 (10%)

Query: 63  AEEQARKAAQALGFYQPRIESDVK--GGNNPRLILTIDPGEPVHLRNV-----------T 109
           AE++ ++     G+Y   + + +     N   ++ ++  G    +R +           T
Sbjct: 141 AEQELKRQYLTRGYYAAEVTTTITPIDRNRVAVLFSVAEGPSAKIRQINFIGNQAFSSDT 200

Query: 110 IRVDGPAADLKAFRVPVSNDLKSGAVLNHGHYEDAKRLIQNQASRYGFFSGRFTRQKLAV 169
           +R +   +    F     NDL +   L  G  E  +    N+   Y  FS   T+  L  
Sbjct: 201 LRDEMQLSTPNWFSWYTKNDLYAKDKLT-GDLEHVRSYYLNRG--YLEFSIESTQVSLTP 257

Query: 170 DPQAGVADIELIYDSGPRYTLGKVSFAGDTPFDEELLHRMVPFKSGTPYDSE 221
           D +     + L    G  YT+  +  AG+    E  L ++V  K+G  + +E
Sbjct: 258 DKKEMYLTVTL--HEGEPYTIASIGLAGNLLDREAELKKLVNIKAGERFSAE 307