Pairwise Alignments

Query, 1052 a.a., chemotaxis protein CheY from Pseudomonas simiae WCS417

Subject, 1765 a.a., sensory box histidine kinase/response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  199 bits (507), Expect = 1e-54
 Identities = 212/766 (27%), Positives = 330/766 (43%), Gaps = 121/766 (15%)

Query: 372  IAESEAFSRALIDTAPIGLCVIRRS----DHHVLLQNQHALQWQDAR--PLYDLLKQQPH 425
            +A SEA  +AL D A IG+  +       D +        L   + R  P++D+L  Q  
Sbjct: 899  LAVSEAHFKALFDGATIGIVNVDIKGLILDCNYQFCEDMGLSRDELRSTPIFDVLSAQDK 958

Query: 426  T---APGQADLESRGRHLHVAFVPTRYQSQDAWLCV----VHDVTRHIEDAAA------- 471
                A  +  +E +  H        R   +  W+ V    + D     E A         
Sbjct: 959  DVAKAQFKELVEGKIDHYRGERSFVRPSGEPLWMTVNVSTLLDSQNQFESAVVSMVDMTE 1018

Query: 472  -------LEEARQAADSASQAKSRFLATMSHEIRTPLYGVLGTLELLGLTSLAPRQQDYL 524
                   L  A+  AD+AS+AK  FLA MSHEIRTP+  ++G  +L   T L  +Q++YL
Sbjct: 1019 LKLLSDELLVAKDEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTQLDKKQKNYL 1078

Query: 525  QTIQRSSTTLFQLISDVLDVSKIEAGQMTLELQDFCPLELTEDCVRTYGAFARSKGLQLY 584
            + I+R+S +L  +I+D+LD SKIEAG++ +E   F    + ED    +   A  K ++L 
Sbjct: 1079 EKIERASQSLLSIINDILDFSKIEAGKLDIENVSFQLDTMLEDLSDMFSERAAQKQIELL 1138

Query: 585  ACIDANLPDRLRGDPLRIRQILNNLLSNAIKFTDNGRVVLRLRGLETSDGRVELQWQVSD 644
              +  N+P  L GDPLR+ Q+L NL++NAIKFT+ G V+L L  +E  +  V L++ V D
Sbjct: 1139 FAVAPNVPRHLLGDPLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQQNDDVVLRFSVRD 1198

Query: 645  S----------------------------GVGIAQAQQHQLFDPFYQAEDATRQAGAGLG 676
            S                            G G+  A   QL +    +     Q G G  
Sbjct: 1199 SGIGLTQEQQSKLFKSFTQADTSTTRKYGGTGLGLAISKQLVELMGGSIGVESQLGHGST 1258

Query: 677  LAICKWLCELMHGQLNVVSEPGLGSSFTL---QVALEPVPGTLADCPVFSPDT----PAV 729
                  LC +  GQ   V +   G S  +         +  T  +   F+ DT       
Sbjct: 1259 FFFTVKLC-ISSGQKLFVGQELDGMSILVADDNATARDIMRTTLESMGFNVDTVRSGDEA 1317

Query: 730  YVRAPEAERTQCMIDWLKRLGLDS-----RVFAADTPAAALLVDFTHDPAWPGTRIIASA 784
             +R  + E    +IDW K   LD      ++      A  +L+   H      T+I    
Sbjct: 1318 IMRCSQQEYAVALIDW-KMPNLDGIETAKQIKQQTKNAPRILMVSAHANQDFLTQIEQLG 1376

Query: 785  GGPSPAQPYGSDWAVDANDVRAIAWAVYLAQHGAEADHRPAPPTQARPLN-LQVLVAEDN 843
                 ++P  +   +D   + A+  +  L     + +     P    PL   ++L+ EDN
Sbjct: 1377 LAGYISKPISASRLLDGI-MNALGRSGILPVRRHQDN---IAPELLLPLKGKRILLVEDN 1432

Query: 844  VINAAIIQEQLEALGCSVVLTSDGEQALTQWLPGRFDLVLTDVNMPVMNGYQLAEALRRQ 903
             +N  +  E LE +G  + + ++G+ AL +     FDLVL D  MPVM+GYQ  +A+R++
Sbjct: 1433 EMNLEVATEFLEQVGIILSIATNGQIALDKLAQQSFDLVLMDCQMPVMDGYQATKAIRQR 1492

Query: 904  D--ATLPIIGITANAMREEGEHCTAVGMNGWMVKPLNLATLRAQLEKHCKIEVPAVVD-- 959
               A LP+I +TANAM  + E C   GMN  + KP+ +  L   L K+    VP++ +  
Sbjct: 1493 PELAQLPVIAMTANAMAGDKEMCLRAGMNDHIAKPIEVNLLYQTLLKYLGAPVPSLENAE 1552

Query: 960  ------MPPLS---------PKMREL----------------------FVTTLR---QDV 979
                  + PL+         P+  EL                      F T+ R     +
Sbjct: 1553 FVVNESLNPLNLDVESVVKWPEHPELDIDRGLQLVQNSKRLYQRIFDRFATSQRNVVDQI 1612

Query: 980  HTTLAALDNQDASGTAQQLHSMAGALGAVQLVDLANAFVELELRLT 1025
            +  LA+   +DA   A  L  +AG L + +L +LA    +LEL L+
Sbjct: 1613 NKALASNKREDAVRMAHTLKGLAGNLSSSKLAELAR---QLELHLS 1655