Pairwise Alignments

Query, 1052 a.a., chemotaxis protein CheY from Pseudomonas simiae WCS417

Subject, 1119 a.a., putative PAS/PAC sensor protein (RefSeq) from Shewanella sp. ANA-3

 Score =  187 bits (476), Expect = 3e-51
 Identities = 107/285 (37%), Positives = 165/285 (57%), Gaps = 2/285 (0%)

Query: 440 LHVAFVPTRYQSQDAWLCVVHDVTRHIEDAAALEEARQAADSASQAKSRFLATMSHEIRT 499
           + +  VP +   +  +   + D++    +   L++A++ A+  S+ KSRFLATMSHEIR+
Sbjct: 452 IELEVVPIQLGDEVLFTAFLRDISERKANEQKLQQAKEQAEQGSKVKSRFLATMSHEIRS 511

Query: 500 PLYGVLGTLELLGLTSLAPRQQDYLQTIQRSSTTLFQLISDVLDVSKIEAGQMTLELQDF 559
           PL  +LG +ELL  +SL+  Q+ +    + + + L   I+D+LD SKIEAGQM LE  +F
Sbjct: 512 PLNAILGGVELLLDSSLSKDQRIHANIAREAGSALLHTINDILDFSKIEAGQMVLESHEF 571

Query: 560 CPLELTEDCVRTYGAFARSKGLQLYACIDANLPDRLRGDPLRIRQILNNLLSNAIKFTDN 619
            P +L    ++     A  KGL+L + ++ N+P  + GD  R+RQ+L+NL+ NAIKFT +
Sbjct: 572 EPDKLVAQVLQILEPKAFEKGLELVSFVNRNVPRTVVGDQQRLRQVLHNLVDNAIKFTAS 631

Query: 620 GRVVLRLRGLETSDGRVELQWQVSDSGVGIAQAQQHQLFDPFYQAEDA--TRQAGAGLGL 677
           G + + +   +     V+L  +V+DSG+GI+   Q +LF  F Q  D   T   G GLGL
Sbjct: 632 GTITVEMWIPDNHQTEVQLYCRVTDSGIGISAEAQSKLFKEFSQVHDTHNTNYKGTGLGL 691

Query: 678 AICKWLCELMHGQLNVVSEPGLGSSFTLQVALEPVPGTLADCPVF 722
           AIC  L  +M G + + SE G GS FT  V+L+ + G       F
Sbjct: 692 AICSELITMMGGTIELQSELGQGSRFTFYVSLQLLEGNFCHSHYF 736



 Score = 71.6 bits (174), Expect = 3e-16
 Identities = 43/125 (34%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 837 VLVAEDNVINAAIIQEQLEALGCSVVLTSDGEQALTQWLPGRFDLVLTDVNMPVMNGYQL 896
           +L+AED+  N  I    L   G  +    +G +A+       FDLVL DV MP M+G + 
Sbjct: 877 ILLAEDSPANQIIAGTMLTKAGFDITYACNGLEAVKLVAEKPFDLVLMDVRMPEMDGLEA 936

Query: 897 AEALRRQDATLPIIGITANAMREEGEHCTAVGMNGWMVKPLNLATLRAQLEKHCKIEVPA 956
            E + +      I+ ++AN M+EE EHC  VGM  ++ KP+   TL   ++K       A
Sbjct: 937 TEVILQNHPEQVILAMSANVMKEEIEHCYRVGMKDFIAKPVKQKTLLHAIQKWLP---NA 993

Query: 957 VVDMP 961
           VV +P
Sbjct: 994 VVSLP 998