Pairwise Alignments

Query, 928 a.a., histidine kinase from Pseudomonas simiae WCS417

Subject, 1236 a.a., sensory box histidine kinase/response regulator (RefSeq) from Shewanella amazonensis SB2B

 Score =  186 bits (473), Expect = 6e-51
 Identities = 108/252 (42%), Positives = 152/252 (60%), Gaps = 1/252 (0%)

Query: 425 DISARTQIEAALEQARQSADAANEAKTLFLATMSHEIRTPLYGVLGTLELLARTRLDAQQ 484
           DI+     E AL +A+Q A+ AN  K+ FLA MSHEIRTP+  ++G L+L  RT L  QQ
Sbjct: 697 DITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAGRTSLTEQQ 756

Query: 485 KSYLHAIEGSSATLLQLICDVLDVSKIEAGQLALELSEFCVPTLVQEVVQGYAAAAHSKG 544
           K YL     S+ +LL++I D+LD SKIEAG+L LE   F +  ++   +   A  A  KG
Sbjct: 757 KDYLDKASFSAQSLLRIINDILDFSKIEAGKLELEKVAFPLDKVLDHSLDLNALRAQEKG 816

Query: 545 LQLYACLDPQLPRRLIGDASRVRQILNNLLSNAVKFTDSGRVVLRVKKLGREGERVCLQW 604
           ++L           L GD  R+ Q+L NLLSNAVKFT +G + L  + +G    R+ L++
Sbjct: 817 IELLLYAPVSAGIMLKGDPLRLGQVLINLLSNAVKFTQNGEIELGCEDVGERDHRITLKF 876

Query: 605 QISDTGKGIAPADQAFIFEPFYQSEGN-SHVIAGTGLGLPICLRLTHLMNGTLRMVSEPG 663
            + DTG GI+   Q  +F+ F Q++G+ +    GTGLGL I   L  +M GT+++ SEPG
Sbjct: 877 WVRDTGIGISREQQDKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVESEPG 936

Query: 664 LGSSFSLTVPLE 675
           +GS+FS TV  E
Sbjct: 937 VGSTFSFTVSFE 948



 Score = 70.5 bits (171), Expect = 6e-16
 Identities = 40/113 (35%), Positives = 63/113 (55%), Gaps = 2/113 (1%)

Query: 808  ILVAEDNVINQLILRDQLEELGCSVELAGDGEDALARWHEGTFDVVLTDVNMPRLNGYEL 867
            +L+ EDN INQ +  + L+  G  V++A +G+ +L    + ++D +L D+ MP ++G   
Sbjct: 1111 VLLVEDNFINQQVATELLKSAGYEVDVADNGQISLEMVGKRSYDAILMDIQMPVMDGLTA 1170

Query: 868  AEALRRLGC--TTPIIGATANALRGEEALCLAAGMNHCLVKPFTLRALSTVLA 918
            A  LR+       PII  TA+A+ G+    LAAGMN  + KP  L  L   L+
Sbjct: 1171 ATELRKRYSFDELPIIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFETLS 1223



 Score = 35.0 bits (79), Expect = 3e-05
 Identities = 20/66 (30%), Positives = 33/66 (50%)

Query: 806  LHILVAEDNVINQLILRDQLEELGCSVELAGDGEDALARWHEGTFDVVLTDVNMPRLNGY 865
            L  LV +DN     I    + +    VE A  G +AL +  +   D+VL D  MP ++G 
Sbjct: 967  LRTLVVDDNPTALQIYSSVMRDFHFEVETASTGAEALYKLCKQQVDLVLLDWMMPEMDGI 1026

Query: 866  ELAEAL 871
            ++ +A+
Sbjct: 1027 QVIDAI 1032