Pairwise Alignments

Query, 928 a.a., histidine kinase from Pseudomonas simiae WCS417

Subject, 1230 a.a., PAS/PAC sensor hybrid histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  182 bits (462), Expect = 1e-49
 Identities = 105/252 (41%), Positives = 153/252 (60%), Gaps = 1/252 (0%)

Query: 425 DISARTQIEAALEQARQSADAANEAKTLFLATMSHEIRTPLYGVLGTLELLARTRLDAQQ 484
           DI+     E AL +A+Q A++AN  K+ FLA MSHEIRTP+  ++G L+L +RT+L  QQ
Sbjct: 697 DITRHKSNEVALLEAKQDAESANLYKSEFLANMSHEIRTPMNAIIGMLQLASRTQLTPQQ 756

Query: 485 KSYLHAIEGSSATLLQLICDVLDVSKIEAGQLALELSEFCVPTLVQEVVQGYAAAAHSKG 544
             YL     S+ +LL++I D+LD SKIEAG+L LE   F +  ++   +   A  A  KG
Sbjct: 757 ADYLDKAGFSAQSLLRIINDILDFSKIEAGKLELERVAFPLDKVLDHALDLNALKAQEKG 816

Query: 545 LQLYACLDPQLPRRLIGDASRVRQILNNLLSNAVKFTDSGRVVLRVKKLGREGERVCLQW 604
           ++L           L GD  R+ Q+L N+LSNAVKFT SG + L  + +G    R+ L++
Sbjct: 817 VELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFTQSGEIELGCEDVGERDHRITLKF 876

Query: 605 QISDTGKGIAPADQAFIFEPFYQSEGN-SHVIAGTGLGLPICLRLTHLMNGTLRMVSEPG 663
            + DTG GI+   Q  +F+ F Q++G+ +    GTGLGL I   L  +M GT+++ SE G
Sbjct: 877 WVRDTGIGISKEQQESLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVQSELG 936

Query: 664 LGSSFSLTVPLE 675
           +GS+FS T+  E
Sbjct: 937 VGSTFSFTISFE 948



 Score = 70.9 bits (172), Expect = 5e-16
 Identities = 42/115 (36%), Positives = 62/115 (53%), Gaps = 2/115 (1%)

Query: 808  ILVAEDNVINQLILRDQLEELGCSVELAGDGEDALARWHEGTFDVVLTDVNMPRLNGYEL 867
            IL+ EDN INQ +  + L+  G  V++A +G+ AL       +D VL D+ MP ++G   
Sbjct: 1112 ILLVEDNFINQQVATELLKSAGYEVDVAENGQVALDMVDAKQYDAVLMDIQMPVMDGLTA 1171

Query: 868  AEALRRLGC--TTPIIGATANALRGEEALCLAAGMNHCLVKPFTLRALSTVLAPY 920
             + LR+       P+I  TA+A+ G+    LAAGMN  + KP  L  L   LA +
Sbjct: 1172 TKELRKRYTKEELPVIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFDTLAQW 1226