Pairwise Alignments

Query, 415 a.a., transporter from Pseudomonas simiae WCS417

Subject, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score = 72.0 bits (175), Expect = 3e-17
 Identities = 88/384 (22%), Positives = 153/384 (39%), Gaps = 92/384 (23%)

Query: 12  VLILLLGGAVLTLRSPASDPVGTQEQWQAVKPEALVHQIGLVGKIEPDTTITLTAPFDGN 71
           +L LL+  AVL+ + P + P       ++V+ + +   + +VGK++ + ++ + A   G 
Sbjct: 11  LLTLLMNSAVLSAKEP-NQPPAISVVTESVQSQQISQSLSVVGKLKAEQSVDIAAEVAGK 69

Query: 72  VQANLVEQGQRVEAGQVLLRMDPATLEVQLRDALSAQLKARRTVQEMQDWDNGPTVTRAR 131
           V    V+  Q+V+ GQ+L+++D          A +A ++A+  +Q+              
Sbjct: 70  VDMIAVQANQQVKKGQILIKLDDDK-------AQAALVEAKAYLQD-------------- 108

Query: 132 RSLRTVEMTAGNTQRKLTESENLFKRGIIPRNELDDLKQQTQQQQLDLASARSELQQAID 191
                        QRKLTE E L KR  I   E+D      Q+ ++++  AR    QA  
Sbjct: 109 ------------EQRKLTEYERLLKRNAITPTEID-----AQRARVEIGQARLNAAQA-- 149

Query: 192 QGKGEYRQIADMELTNATVKYDALHKLLEGKEVKAPFSGIVVPPPGNNSPQAGGNNTAPV 251
                   +AD+ +T                   APF G V                   
Sbjct: 150 -------NLADLHIT-------------------APFDGTV--------------GFIDF 169

Query: 252 QAGSKVSQGQVLFGLANIERLKIVAKVSELDINQLHQGQAVEVLGDGFDGERLTGSVSVV 311
             G  VS G  L  L N+  +++  ++ E  + QL +G  V+   + +   +  GSV  V
Sbjct: 170 SRGKWVSAGSELLTLDNLSLMRLDLQIPERYLPQLSKGMKVQGSSEAWPNVQFEGSVVAV 229

Query: 312 SGLAIAGDSQGSAQFPVTLSIPKLTPQQLQRVRLGMSARLTIVTYNNAQAIVIPSQAIR- 370
                   +Q +    V +  P   P Q  +  + MSAR   + +    A +IP QA+  
Sbjct: 230 DSRI----NQETLNLRVRVHFP--NPDQRLKPGMLMSAR---IHFPAISAPIIPVQALEY 280

Query: 371 -ADKTVEYREAMDKPSERVKVTTG 393
              K   Y    D  ++R +V+ G
Sbjct: 281 SGTKRFVYVIGEDNVAKRREVSLG 304