Pairwise Alignments

Query, 415 a.a., transporter from Pseudomonas simiae WCS417

Subject, 366 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score = 54.3 bits (129), Expect = 6e-12
 Identities = 61/265 (23%), Positives = 112/265 (42%), Gaps = 30/265 (11%)

Query: 147 KLTESENLFKRGIIPRNELDDLKQQTQQQQLDLASARSELQQAID-QGKGEYRQIADME- 204
           K+ + + + K  II   +  DL  Q ++ +  L   + E   A   + KG   ++A    
Sbjct: 97  KIAKGQMVTKNQIIALIDKGDLDAQLERAKAQLKVRQQEFNAASALKNKGLQGEVAFTNA 156

Query: 205 ---LTNATVKYDALHKLLEGKEVKAPFSGIVVPPPGNNSPQAGGNNTAPVQAGSKVSQGQ 261
              LT+A      + +LL+  +V+APF G+V               T P++ G  V  G 
Sbjct: 157 AAALTDAQSSLSTVQRLLDNTQVRAPFDGVV--------------ETLPIEKGDFVGIGD 202

Query: 262 VLFGLANIERLKIVAKVSELDINQLHQGQAVEVLGDGFDGERLTGSVSVVSGLAIAGDSQ 321
            +  + ++ +L I A VSE  I  +   QA  +     DG +  G V  +S L+    S 
Sbjct: 203 PVASIIDLHKLVIEADVSERHIQHVQLEQAARI--RFIDGTQTQGKVRYISRLS----SP 256

Query: 322 GSAQFPVTLSIPKLTPQQLQRVRLGMSARLTIVTYNNAQAIVIPSQ-AIRADKTVEYREA 380
            +  F + + +    PQ  Q +  G+SA + +   + A   + P+  A+  +  +  +  
Sbjct: 257 ATNTFAIEVEVD--NPQ--QAIPAGVSAEVELSLMSQAAIKITPAMLALDEEGNLGVKTL 312

Query: 381 MDKPSERVKVTTGQATAQGVEVFGL 405
             +  + V +   +A   GV + GL
Sbjct: 313 QGEHVKFVPIQLVKAEQDGVWLTGL 337



 Score = 37.7 bits (86), Expect = 6e-07
 Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 14/109 (12%)

Query: 50  IGLVGKIEPDTTITLTAPFDGNVQANLVEQGQRVEAGQVLLRMDPATLEVQLRDALSAQL 109
           I L G+  PD    + A   G +    + +GQ V   Q++  +D   L+ QL  A  AQL
Sbjct: 71  IELYGRTAPDRQAKIGAEIAGRIAEVKIAKGQMVTKNQIIALIDKGDLDAQLERA-KAQL 129

Query: 110 KARR-------------TVQEMQDWDNGPTVTRARRSLRTVEMTAGNTQ 145
           K R+                E+   +    +T A+ SL TV+    NTQ
Sbjct: 130 KVRQQEFNAASALKNKGLQGEVAFTNAAAALTDAQSSLSTVQRLLDNTQ 178



 Score = 23.9 bits (50), Expect = 0.008
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 66  APFDGNVQANLVEQGQRVEAGQVLLRMDPATLEVQLRDALSAQLKARRTVQEMQ 119
           APFDG V+   +E+G  V  G      DP    + L   +     + R +Q +Q
Sbjct: 181 APFDGVVETLPIEKGDFVGIG------DPVASIIDLHKLVIEADVSERHIQHVQ 228