Pairwise Alignments

Query, 405 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 407 a.a., ABC transporter permease from Methanococcus maripaludis JJ

 Score = 91.3 bits (225), Expect = 5e-23
 Identities = 90/418 (21%), Positives = 186/418 (44%), Gaps = 42/418 (10%)

Query: 16  SQLLHEAFVSLRTLGKRSILALLGIVIGSSSVVALINIGHNAAVDAAMIFKDMGTDTL-I 74
           S++   AF  ++    RS + ++G+V+  +SV+ +I+ G           + +G D + +
Sbjct: 4   SKIFKLAFNMVKGSKLRSWITIIGVVVAVASVITIISAGELMEKQVTHELEKLGGDVISV 63

Query: 75  AQFPPKGASTVPMPARLDLDAVRQTVPGIAHVGALTLFSGPIVFHGRTVNANLVGSTPDI 134
                + +S  P   + D+  ++  +P + +V         I +  + + + + G  P +
Sbjct: 64  YAITTETSSKTPELTKTDVLVIKG-IPSVKYVDKRVTSYSKISYGDKELYSQITGVDPAV 122

Query: 135 KDAM-RLALQQGRFLSGFDANETYGVIGDQVAQSLGAPGDPLRLGDRVRINDYLFLIVGI 193
              + +  ++ GR L   D N    VI + +A         + +   ++I +  F ++GI
Sbjct: 123 WPKITQEKVETGRMLQPGDKNVV--VINNYLANE--EFNRKININQIIKIGNKSFRVIGI 178

Query: 194 LRSQPRAMLMPVQANESLFIPAEGMRRI-----YATPQ----IGNLIIRAAPGQDMERIA 244
           L +    +         ++ P + +  I     Y+ P+      +L I+     D +   
Sbjct: 179 LDNDSSGLASLFSGG--IYAPLDSVYDIEQDSDYSVPKERGTYDSLEIKLKENVDTDAAV 236

Query: 245 KNVAVALQPQ--LTDHDVD---------IQVPQQMIDGMTRQSRTFAYLLLALGAISLVG 293
           +++   L+    +T+ + D         I+  Q +I G+T         L  +  ISL+ 
Sbjct: 237 QDIEQKLRTSRHVTEKNQDFYISSAKSFIESSQSIIGGIT-------LFLSFIAGISLIV 289

Query: 294 GGVGVMNVMLMNVSERRREIGIRMALGARQRDIRNLFLLEAVTLTAVGALCGAVLGLTAA 353
           G  G+ N M   V E+ +EIGI  A+GA+  DI  LFL  +  +   G   G ++G+   
Sbjct: 290 GAFGISNTMFTAVLEKTKEIGIMKAIGAKNEDILLLFLFNSGLIGLAGGFLGLLIGVLIT 349

Query: 354 WLYAWL------SGWEFALAIAALPLGVGSTLLVGLFFGIYPAVSASRLQPVEALRDE 405
            +  ++      + +EF ++I ++ + +  ++  G+  G  PA +AS+L+PV+ALR E
Sbjct: 350 QVITYVIALKFGTPFEFYVSIKSVVVALVVSIGAGILAGAVPAYNASKLKPVDALRSE 407