Pairwise Alignments

Query, 352 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 725 a.a., TIGR01666 family membrane protein from Vibrio cholerae E7946 ATCC 55056

 Score = 43.9 bits (102), Expect = 1e-08
 Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 21/146 (14%)

Query: 28  HAVRVSIGLLATILLTTGINLPHGEWASVTMLVVIGGLQHHGNIGKKAVERAYGTLIGAS 87
           HA+R+SI L     +  G  +  G W  +T L V     ++    +K   R  GTL G  
Sbjct: 396 HALRLSITLTLGYAIIQGFGIERGYWILLTTLFVC--QPNYAATKQKLTARIIGTLAGLL 453

Query: 88  VGLLLVV----QEAYVGQPLLTYLLMSVVCGFFSYHAIGKGGYTALLSAITVFIVAGHGD 143
           +G+ L+     QE+      L +++ S V  FF++     G  T  ++ + +F       
Sbjct: 454 IGVPLLTFFPSQESQ-----LVFIVFSGVM-FFAFRLNNYGYATGFITLLVLFCF----- 502

Query: 144 NPLSDG----LWRTVDILIGIALALA 165
           N L +G    L R  D LIG ALA+A
Sbjct: 503 NQLGEGYAVVLPRLADTLIGCALAVA 528