Pairwise Alignments

Query, 510 a.a., NADH:ubiquinone oxidoreductase subunit M from Pseudomonas simiae WCS417

Subject, 496 a.a., proton-translocating NADH-quinone oxidoreductase, chain M from Synechococcus elongatus PCC 7942

 Score =  286 bits (733), Expect = 9e-82
 Identities = 183/488 (37%), Positives = 273/488 (55%), Gaps = 27/488 (5%)

Query: 2   ILPWLILIPFIGG--LLCWMGERFGATLPRWIALLTMSLELALGLWLWAHGDYSFAPAPG 59
           +L  LI +P +    LLCW G    A   R  A +     LA+ + L+   D      P 
Sbjct: 1   MLSALIWLPIVAATVLLCWPGTLSAAWAQR-SAAIAAGAALAIAIALFFQFD------PQ 53

Query: 60  VDPTFALEFKHVWIQRFGINVHLALDGLSLLMILLTGLLGILSVLCSWKEIQRHVGFFHL 119
           +     LE +  WI++ G+   L +DGLSL ++ L  LL  L +    ++ QR   ++ L
Sbjct: 54  IHDWQLLE-QLPWIEQLGLGYRLGVDGLSLPLVGLNALLTFLIIAGLERQEQRSRLYYGL 112

Query: 120 NLMWILGGVVGVFLALDLFMFFFFWEMMLVPMYFLIALWGHSSSDGKKTRIYAATKFFIF 179
            L+ + G V G FLA DL +FF F+E+ L+P+Y LI++WG +       R YAATKF I+
Sbjct: 113 MLL-LSGAVSGAFLAQDLLLFFVFYEVELIPLYLLISIWGGAR------RGYAATKFLIY 165

Query: 180 TQASGLIMLVAILGLVLVNFNNTGVITFNYADLLKTKMSLTTEYILMLGFFIAFAVKLPV 239
           T  SG ++L+  L L +++    G  +F Y   L   + +  +  L++   +AF +K P+
Sbjct: 166 TALSGALLLIGFLALTILS----GAGSFAYNPNLAAVLPIAQQVTLLVLILVAFGIKTPI 221

Query: 240 VPFHSWLPDAHAQAPTAGSVDLAGILLKTAAYGLLRFALPLFPNASAEFAPIAMTLGLIG 299
           VPFH+WLPDAH +A T  S+ LAG+LLK   YG+LRF L LFP      AP    L ++ 
Sbjct: 222 VPFHTWLPDAHVEASTPVSMMLAGVLLKLGTYGILRFGLGLFPQVWPIVAPWLAGLAVVS 281

Query: 300 IFYGAFLAFAQTDIKRLIAFSSVSHMGFVLIGIYSGSQLALQGAVIQMLAHGVSAAALFI 359
             YG+  A  Q D+K+++A+SS+ HMG++L+   + + L+L GAV QM++HG+ +A LF+
Sbjct: 282 TLYGSLSAIVQQDMKKMVAYSSIGHMGYILLAAAAATPLSLLGAVCQMISHGLISALLFL 341

Query: 360 LSGQLYERLHTRDMREMGGVWSRIAYLPAI-SLFFAA--ASLGLPGTGNFIGEFLILMGA 416
             G +Y R  TRD+R + G+ +    LP + SL   A  AS GLPG   FI EF+I  G+
Sbjct: 342 EVGFVYSRTGTRDLRVLQGLLTPERGLPIVGSLMILAVMASGGLPGMVGFIAEFMIFRGS 401

Query: 417 FVQTPWISAIATSGLVFGSVYSLIMIHRAYFG--PAKSDTVLQGMDARELIMVLGLAVLL 474
           F      +     G    SVY L++++RA+FG  P + +T L  +  RE I  L LA L+
Sbjct: 402 FSTFTVQTLFCMVGTGLTSVYFLLLVNRAFFGRLPDQMET-LPNVALREHIPALMLATLI 460

Query: 475 IYIGVYPQ 482
           +  GV PQ
Sbjct: 461 VIFGVQPQ 468