Pairwise Alignments

Query, 510 a.a., NADH:ubiquinone oxidoreductase subunit M from Pseudomonas simiae WCS417

Subject, 643 a.a., NADH dehydrogenase I, chain L (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  125 bits (315), Expect = 4e-33
 Identities = 117/470 (24%), Positives = 212/470 (45%), Gaps = 52/470 (11%)

Query: 6   LILIPFIGGLLC-----WMGERFGATLPRWI--ALLTMSLELALGLWLWAHGDYSFAPAP 58
           ++L+PF+  L+      WM  R    +   I  A++ +S   A          + +  AP
Sbjct: 7   ILLLPFLSFLILGIGGKWMSHRTAGAIGTLILGAVVVLSYVTA----------FQYFSAP 56

Query: 59  GV-DPTFA--LEFKHVWI---QRFGINVHLALDGLSLLMILLTGLLGILSVLCSWKEIQR 112
            + D TFA  + +   W+   +    ++ + LD +S++M+++   + ++  + S+  ++ 
Sbjct: 57  RLEDGTFATLIPYNFTWLPFTETLRFDLGILLDPISVMMLIVISTVSLMVHIYSFGYMKG 116

Query: 113 HVGF--FHLNLMWILGGVVGVFLALDLFMFFFFWEMMLVPMYFLIALWGHSSSDGKKTRI 170
             GF  ++  L      ++G+ +A ++F  + FWE++ V  Y LI  +       K   I
Sbjct: 117 ETGFQRYYAFLSLFTMSMLGLVVATNIFQMYLFWELVGVSSYLLIGFYYT-----KPAAI 171

Query: 171 YAATKFFIFTQASGLIMLVAILGLVLVNFNNTGVITFNYADLLKTKMSLTTEYILMLGF- 229
            A+ K FI T+ + L  L+ IL  +   +  T   T +   L+    S+     L LG  
Sbjct: 172 AASKKAFIVTRFADLGFLIGIL--IYGYYGGTFGFTPDTVSLISGGASMLP---LALGLM 226

Query: 230 FIAFAVKLPVVPFHSWLPDAHAQAPTAGSVDLAGILLKTAAYGLLRFALPLFPNASAEFA 289
           FI  A K  + P H WLPDA  + PT  S  +    +  A   L+    PLF   + +  
Sbjct: 227 FIGGAGKSAMFPLHIWLPDA-MEGPTPVSALIHAATMVVAGVYLVARMFPLFIAYAPDTL 285

Query: 290 PIAMTLGLIGIFYGAFLAFAQTDIKRLIAFSSVSHMGFVLIGI--------YSGSQLALQ 341
            +   +G    FY A +A  Q+DIKR++AFS++S +GF+++ +        + G  L   
Sbjct: 286 HMIAWVGAFTAFYAASVACVQSDIKRVLAFSTISQIGFMMVALGVCTSMDPHHGG-LGYM 344

Query: 342 GAVIQMLAHGVSAAALFILSGQLYERLHTRDMREMGGVWSRIAYLPAISLFFAAASLGLP 401
            ++  +  H +  A LF+ +G +   +H+ +M  MGG+     Y+P     F  A L + 
Sbjct: 345 ASMFHLFTHAMFKALLFLGAGSIIHAVHSNEMSAMGGLRK---YMPITHWTFLIACLAIA 401

Query: 402 GTGNFIGEFL---ILMGAFVQTPWISAIATSGLVFGSVYSLIMIHRAYFG 448
           G   F G F    IL   F  +P +  + T      + Y   + +  ++G
Sbjct: 402 GIPPFSGFFSKDEILAACFQYSPAMGWVMTVIAAMTAFYMFRLYYGIFWG 451