Pairwise Alignments

Query, 245 a.a., secretin from Pseudomonas simiae WCS417

Subject, 253 a.a., Type II and III secretion system family protein from Pseudomonas fluorescens FW300-N2E2

 Score =  376 bits (965), Expect = e-109
 Identities = 195/253 (77%), Positives = 214/253 (84%), Gaps = 8/253 (3%)

Query: 1   MSLRTLLTALLLTASCSTMADTEVVNLSNRTSADLLPVAQNFIGKDGTVSAYGNQLIVNA 60
           M LRT L  LLL  S S MADT++V L+ RTSADLLPVAQNFIGKDG VSAYGNQLIVNA
Sbjct: 1   MPLRTFLVTLLLGCSLSVMADTQIVPLNYRTSADLLPVAQNFIGKDGQVSAYGNQLIVNA 60

Query: 61  DPAKIQDLRALLAQLDTPAKRLLITVDTNENNQQN--------SGDSQTRIISYGTASRD 112
           +P KI++LR  LAQLDT  KRLLITVDTNENN Q         +  SQTRII+  TASRD
Sbjct: 61  EPGKIEELRQFLAQLDTAPKRLLITVDTNENNLQGDQGYSINGAAPSQTRIINRSTASRD 120

Query: 113 GGIQQIQASEGVPALIQVGQSVPLTTTQQDSYGRLQNQTQYRNVTQGFYVTASVTGETVH 172
           GG+QQ+QASEG PALIQVGQSVP T+ Q D+YGR+Q+QT+YRNVTQGFYVTASVTGETVH
Sbjct: 121 GGVQQVQASEGQPALIQVGQSVPFTSNQTDNYGRMQSQTEYRNVTQGFYVTASVTGETVH 180

Query: 173 LAISTNRDRMSQERPDVVNVQSTDTTVSGRLGEWIPLAGINRETQADKSSTTRSYSTQGR 232
           L+ISTNRDRMSQERPDVVNVQSTDTTVSGRLGEWI LAG+NR+TQADK   TRSYSTQGR
Sbjct: 181 LSISTNRDRMSQERPDVVNVQSTDTTVSGRLGEWITLAGVNRQTQADKQGLTRSYSTQGR 240

Query: 233 DDLTLRVKVDTLN 245
           DD+ LRVKVDTLN
Sbjct: 241 DDMILRVKVDTLN 253