Pairwise Alignments

Query, 440 a.a., recombination factor protein RarA from Pseudomonas simiae WCS417

Subject, 449 a.a., replication-associated recombination protein A from Vibrio cholerae E7946 ATCC 55056

 Score =  498 bits (1283), Expect = e-145
 Identities = 255/440 (57%), Positives = 319/440 (72%), Gaps = 6/440 (1%)

Query: 4   FRSDPIAQPLAARLRSTNLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTL 63
           F  D   +PLAAR+R   +++Y+GQ+H+L  GKPLR ALE G +HSMI WGPPG GKTTL
Sbjct: 8   FSGDEDFRPLAARMRPQTVEQYIGQQHILGPGKPLRRALEAGHIHSMILWGPPGTGKTTL 67

Query: 64  ARLLAKVSDAHFETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDA 123
           A + A  ++A  E VSAV +GVKEIR A+E A++     G+RTILFVDEVHRFNKSQQDA
Sbjct: 68  AEVAANYANAEVERVSAVTSGVKEIRAAIEKARENKLS-GRRTILFVDEVHRFNKSQQDA 126

Query: 124 FLPYVEDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAAMQKLLQRALSE-DKGL 182
           FLP++EDGT+ FIGATTENPSFELNNALLSRARVY L SL++  + + L +A+++ ++GL
Sbjct: 127 FLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLNQQEILQALHQAIADTERGL 186

Query: 183 GKRQLRVSEEGFKILLTAADGDGRRFLNLVENASDLAEDGSE----IGVDLLQSLLGDTR 238
           GK     ++     L    +GD R  LN +E   D+A +  +    I + LL  + G+  
Sbjct: 187 GKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMAREDDQGRKQIDLPLLAEVAGEKV 246

Query: 239 RRFDKGGEAFYDQISALHKSVRGSNPDGALYWFARMIDGGCDPLYLARRVVRMASEDIGN 298
            RFD  G+ +YD ISA+HKS+RGS+PD ALYW ARMI  GCDPLY+ARR++ +ASED+GN
Sbjct: 247 SRFDNKGDIWYDLISAVHKSIRGSDPDAALYWAARMISAGCDPLYIARRLLAIASEDVGN 306

Query: 299 ADPRALSLCLAAWDVQERLGSPEGELAVAQAITYLACAPKSNAVYMGFKSALRAAAEYGS 358
           ADPR + + LAAWD   R+G  EGE A+AQAI YLACAPKSNAVY  +K AL  A     
Sbjct: 307 ADPRGMQVALAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAWKQALSDAHNLPE 366

Query: 359 LEVPMHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDYFPDDLEPLPLYQPVPRGLEL 418
            EVP HLRNAPT+LMK LGYG+EYRYAHDEP AYAAGE YFP ++     YQP PRGLE 
Sbjct: 367 FEVPPHLRNAPTRLMKDLGYGEEYRYAHDEPGAYAAGECYFPPEMSGTRYYQPTPRGLET 426

Query: 419 KIGEKLNHLAELDRLSPKQR 438
           KI EKL +LA+L+  SP++R
Sbjct: 427 KIAEKLAYLADLNAKSPQKR 446