Pairwise Alignments

Query, 440 a.a., recombination factor protein RarA from Pseudomonas simiae WCS417

Subject, 1113 a.a., DNA polymerase III, subunits gamma and tau (RefSeq) from Shewanella loihica PV-4

 Score = 65.9 bits (159), Expect = 6e-15
 Identities = 73/255 (28%), Positives = 120/255 (47%), Gaps = 46/255 (18%)

Query: 11  QPLAARLRSTNLDEYVGQEHLLARGKPLREALEQGALH-SMIFWGPPGVGKTTLARLLAK 69
           Q LA + R    ++ VGQ H+L     L  AL Q  LH + +F G  GVGKT+LARL AK
Sbjct: 4   QVLARKWRPATFEQVVGQSHVL---HALTNALSQNRLHHAYLFTGTRGVGKTSLARLFAK 60

Query: 70  ---------------------VSDAHF----ETVSAVLAGVKEIRQAVEVAKQQAGQYGK 104
                                ++   F    E  +A    V + R+ ++  + +  + G+
Sbjct: 61  GLNCEQGVTATPCGQCASCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTR-GR 119

Query: 105 RTILFVDEVHRFNKSQQDAFLPYVEDGT--LIFIGATTENPSFELNNALLSRARVYVLKS 162
             +  +DEVH  ++S  +A L  +E+    + F+ ATT+     L   +LSR   + LKS
Sbjct: 120 FKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQ--RLPVTVLSRCLQFNLKS 177

Query: 163 --LDEAAMQKLLQRALSEDKGLGKRQLRVSEEGFKILLTAADGDGRRFLNLVENASDLAE 220
             LDE  +Q  L   L+++      Q+   +   K+L  AA+G  R  L+L + A  +A 
Sbjct: 178 LTLDEICVQ--LGHILAQE------QVGYDDGAVKLLAKAANGSMRDALSLTDQA--IAF 227

Query: 221 DGSEIGVDLLQSLLG 235
              ++ +  +Q++LG
Sbjct: 228 GAGQVRLTQVQTMLG 242