Pairwise Alignments

Query, 478 a.a., nitrogen regulation protein NR(I) from Pseudomonas simiae WCS417

Subject, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  288 bits (737), Expect = 3e-82
 Identities = 174/461 (37%), Positives = 257/461 (55%), Gaps = 15/461 (3%)

Query: 9   IVDDDRSIRWVLEKALQQEGMTTQSFDSADGVMSRLARQQPDVIISDIRMPGASGLDLLA 68
           +V+D  S+  +    L    +      +    +  + R++PD+I+ D+R+P  +G+D+L 
Sbjct: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60

Query: 69  RIREQHPRLPVIIMTAHSDLDSAVASYQGGAFEYLPKPFDVDEAVALVKRANQHAQEQQN 128
            ++E+ P +P++ MTAH  +D+AV + + GA ++L KP + D     V  A + A + +N
Sbjct: 61  AVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKN 120

Query: 129 QEAPPALTRTPEIIGEAPAMQEVFRAIGRLSHSNITVLINGESGTGKELVAHALHRHSPR 188
            +           IG +  MQ V+R I   + S  ++ I GESGTGKE+ A A+H  S R
Sbjct: 121 -DVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASKR 179

Query: 189 AASPFIALNMAAIPKDLMESELFGHEKGAFTGAANLRRGRFEQADGGTLFLDEIGDMPAD 248
              PFIA+N AAIPKDL+ESELFGH KGAFTGAA  R+G  E ADGGTLFLDE+ +M  D
Sbjct: 180 GDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLD 239

Query: 249 TQTRLLRVLADGEFYRVGGHTPVKVDVRIIAATHQNLETLVHAGKFREDLFHRLNVIRIH 308
            QT+LLR +  G F +VG      VDVR + AT+++    V  G+FREDL++RL VI +H
Sbjct: 240 LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLH 299

Query: 309 IPRMSDRREDIPTLARHFLSRAAQELAVEPKLLKSETEEYLKNLPWPGNVRQLENTCRWI 368
           +P +  R +D+  +A   L   ++E   +   L +E  E  +   WPGNVRQL+N  R +
Sbjct: 300 LPPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNV 359

Query: 369 TVMASGREVHISDLPPELLSLPQDSAPVTNWEQALRQWADQALARGQSNLLDSAVPAF-- 426
            V+  GRE+ +  LPP    L Q SAP+    +AL       LA      +    P +  
Sbjct: 360 VVLNEGREITLDMLPP---PLNQMSAPI---NRAL------PLAHENKVSVHEIFPLWMT 407

Query: 427 ERIMIETALKHTAGRRRDAAVLLGWGRNTLTRKIKELGMKV 467
           E+  IE A++   G    AA  L    +T+ RK++    KV
Sbjct: 408 EKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQTWNEKV 448