Pairwise Alignments

Query, 478 a.a., nitrogen regulation protein NR(I) from Pseudomonas simiae WCS417

Subject, 467 a.a., two component, sigma54 specific, transcriptional regulator, Fis family from Marinobacter adhaerens HP15

 Score =  312 bits (800), Expect = 1e-89
 Identities = 194/475 (40%), Positives = 268/475 (56%), Gaps = 35/475 (7%)

Query: 7   VWIVDDDRSIRWVLEKALQQEGMTTQSFDSADGVMSRLARQQPDVIISDIRMPGASGLDL 66
           + IV+D+  IR  + K L   G       S +         Q D+IISD+R+PGA+G +L
Sbjct: 4   ILIVEDEDIIRSAVRKLLLHAGYEVADAASVEEAEQNHEPDQFDLIISDLRLPGAAGTEL 63

Query: 67  LARIREQHPRLPVIIMTAHSDLDSAVASYQGGAFEYLPKPFDVDEAVALVKR--ANQHAQ 124
           + R     P  PV+IMT+++ L SAV S + GA EY+ KPFD DE +A V+   A + A 
Sbjct: 64  INRA----PNTPVLIMTSYASLRSAVDSMKMGAVEYIAKPFDHDEMLAAVENILARKPAG 119

Query: 125 EQQNQEAPPALTRTPE-------IIGEAPAMQEVFRAIGRLSHSNITVLINGESGTGKEL 177
                ++ PAL  TPE       + G+   MQ VF  I +++ +  TVLI GESGTGKEL
Sbjct: 120 RNSGDDSAPAL-ETPESSDPANIMFGQCEPMQRVFTLIRKVAPTETTVLIQGESGTGKEL 178

Query: 178 VAHALHRHSPRAASPFIALNMAAIPKDLMESELFGHEKGAFTGAANLRRGRFEQADGGTL 237
            A ALH  SPRAA P I++N AAIP+ L+ESELFGHEKGAFTGA + R G  E ADGG+L
Sbjct: 179 AARALHLLSPRAAKPLISVNCAAIPESLIESELFGHEKGAFTGAVSARTGLIEAADGGSL 238

Query: 238 FLDEIGDMPADTQTRLLRVLADGEFYRVGGHTPVKVDVRIIAATHQNLETLVHAGKFRED 297
           FLDEIG++PA+ Q RLLRVL + E  +VG      V+VR+IAATH+NL+ +   G+FRED
Sbjct: 239 FLDEIGELPAEAQARLLRVLQESEIRKVGSTQSRTVNVRMIAATHRNLKAMTRTGEFRED 298

Query: 298 LFHRLNVIRIHIPRMSDRREDIPTLARHFLSRAAQELAVEPKLLKSETEEYLKNLPWPGN 357
           L++RLNV++I IP + +R+ DI  LAR FL R  + +      L  E    L+   WPGN
Sbjct: 299 LYYRLNVMQIRIPPLRERQSDILGLARRFLKRQGERMGKPDLNLSPEAMRALERHRWPGN 358

Query: 358 VRQLENTCRWITVMASGREVHISDLPPELLSLPQDSAPVTNWEQALRQWADQALARGQSN 417
           VR+LEN     T++  G       + P LL L  + +          ++  + L  G + 
Sbjct: 359 VRELENAIERATILCDG-----DVITPSLLDLDSEGSD---------EYIPETLVDGNNE 404

Query: 418 LLDS-AVPAFERIMIETALKHTAGRRRD------AAVLLGWGRNTLTRKIKELGM 465
              +  V A   + +E   +H     +D       A  LG  R +L  + + LG+
Sbjct: 405 QTHTREVDASNDLSLEDYFQHFVLENQDRMSETELAQKLGISRKSLWERRQRLGI 459