Pairwise Alignments

Query, 274 a.a., tRNA 2-thiocytidine biosynthesis protein TtcA from Pseudomonas simiae WCS417

Subject, 311 a.a., TIGR00269 family protein from Methanococcus maripaludis S2

 Score = 52.8 bits (125), Expect = 9e-12
 Identities = 61/248 (24%), Positives = 111/248 (44%), Gaps = 27/248 (10%)

Query: 12  QKRLRRLAGEAVADFNMIEDGDKVMVCLSGGKDSYTMLDVLLHLQKVAPITFEIVAVNMD 71
           ++++R+  G  V   N+     KV + LSGGKDS  M  +L    K  P +  ++A+ ++
Sbjct: 31  KRKVRKTLGRDVLKNNI-----KVAMGLSGGKDSLVMAYLLNEYYKQIPNS-NLIAIMVN 84

Query: 72  QKQPGFPEHVLPAYLK---ALGVEYHIVEKDTY--SVVKELIPEGK------TTCSLCSR 120
           +   G+    + A +K     G+EY IV    Y  + + E++   K        CS C  
Sbjct: 85  EGIEGYRTDGIDAAVKFCEEYGIEYKIVHFKDYLGTNLDEIVKIAKEKNLTMNPCSFCGV 144

Query: 121 LRRGTLYTFADEIGATKMALGHHRDDIVETFFLNMFFNGSLKAMPPKLRADDGRNVV--I 178
           +RR  L   + E     +A+GH+ DD+ +   +N +  G +K +    ++      V  I
Sbjct: 145 IRRKILNRVSIEEKCDFLAIGHNLDDVAQAVMMN-YIEGDVKKLAFLGKSLKHPKFVKRI 203

Query: 179 RPLAYCNEKDIQAYSDFKQ--FPIIPCNL-CGSQENLQRQVVKEMLVDWERKTPGRTESI 235
           +PL    E ++   ++  +  +   PC   C S     R  V ++  + E+  PG   SI
Sbjct: 204 KPLEKIPEDEVLLLAEMLELKYHKSPCPYSCLS----FRSEVSDITDNLEKNHPGSKYSI 259

Query: 236 FRSLQNVI 243
            R  + ++
Sbjct: 260 VRGYERLL 267