Pairwise Alignments

Query, 274 a.a., tRNA 2-thiocytidine biosynthesis protein TtcA from Pseudomonas simiae WCS417

Subject, 324 a.a., tRNA 2-thiocytidine biosynthesis TtcA family protein from Methanococcus maripaludis S2

 Score = 55.1 bits (131), Expect = 2e-12
 Identities = 66/279 (23%), Positives = 115/279 (41%), Gaps = 46/279 (16%)

Query: 4   LTVNQNKLQKRLRRLAGEAVADFNMIEDGDKVMVCLSGGKDSYTMLDVLLHLQKVAPITF 63
           + V  +++ + +    G  V+  N+I   DK++V LSGGKDS  +L +L   ++   +  
Sbjct: 47  IPVVYSRVFEEISERMGRFVSKNNIISPKDKILVGLSGGKDSLALLHLLEPYRRKYGV-- 104

Query: 64  EIVAVNMDQKQPGFPE--------HVLPAYLKALGVEYHIVEKDTYSV-VKELIPEGK-- 112
           +I AV +D    G             +  + K L + + I+  D   V + +++ E    
Sbjct: 105 QIYAVTVDLNINGIRPWTESNKNVEKIAEHCKNLNIPHKIIAHDGNVVEMSKILSENTKG 164

Query: 113 ---TTCSLCSRLRRGTLYTFA----DEIGATKMALGHHRDDIVETFFLNMFFNGSLKAMP 165
              + C  CS +RR  L  +A    +     K+A+GH  +D  +T   N+F    +KA+ 
Sbjct: 165 IEYSPCFSCSMVRRHVLTNYAKNNFESDSNVKIAIGHTLEDNSDTIMANIFKGNIIKALE 224

Query: 166 P------------KLRADDGRNVVIRPLAYCNEK---------DIQAYSDFKQFPIIPCN 204
           P              + +     +IRP+   +E+         DI+ Y D  + P    N
Sbjct: 225 PIKNFNETDVDFKDFKLNLKSCCMIRPMLNVSEEKIVKALVECDIEYYHDKDECPYSRHN 284

Query: 205 LCGSQENLQRQVVKEMLVDWERKTPGRTESIFRSLQNVI 243
                 N  R+   E+L   E   P   E +  S+ N I
Sbjct: 285 -----GNGIRKKSHEVLESIEEDVPNIREMVISSILNSI 318