Pairwise Alignments

Query, 274 a.a., tRNA 2-thiocytidine biosynthesis protein TtcA from Pseudomonas simiae WCS417

Subject, 248 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  115 bits (287), Expect = 1e-30
 Identities = 76/253 (30%), Positives = 124/253 (49%), Gaps = 13/253 (5%)

Query: 3   TLTVNQNKLQKRLRRLAGEAVADFNMIEDGDKVMVCLSGGKDSYTMLDVLLHLQKVAPIT 62
           T    + K  +R+ R   + V  + +IE+GDK+++ LSGGKDS  ++++L    ++    
Sbjct: 2   TQFTEEEKTIRRIERRFNKGVVQYRLIEEGDKILIGLSGGKDSLALVELLGKRARIYKPR 61

Query: 63  FEIVAVNMDQKQPGFPEHV--LPAYLKALGVEYHIVEKDTYSVVKELIPEGKTTCSLCSR 120
           F ++AV++      +      L AY  + GV +  V+ +T           K+ C LCS 
Sbjct: 62  FSVIAVHVVMNNIPYQSDTEYLKAYCDSFGVPF--VQYETS--FDPATDTRKSPCFLCSW 117

Query: 121 LRRGTLYTFADEIGATKMALGHHRDDIVETFFLNMFFNGSLKAMPPKLRADDGRNVVIRP 180
            RR  L+T A E G  K+ALGHH DDI+ET  +N+ + G+   MPP+L        +IRP
Sbjct: 118 NRRKALFTVAKEQGCNKIALGHHMDDILETLLMNITYQGAFSTMPPRLVMKKFDMTIIRP 177

Query: 181 LAYCNEKD---IQAYSDFKQFPIIPCNLCGSQENLQRQVVKEMLVDWERKTPGRTESIFR 237
           +   +E D   + A  D+++        C  +    R  +K +L   E   P    S++ 
Sbjct: 178 MCMVHEADLIELAALHDYRK----QVKNCPYESQSSRSDMKGILRQLEAMNPEARYSLWG 233

Query: 238 SLQNVIPSQLADR 250
           S+ NV    L D+
Sbjct: 234 SMTNVQEELLPDK 246