Pairwise Alignments

Query, 917 a.a., chemotaxis protein CheY from Pseudomonas simiae WCS417

Subject, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

 Score =  550 bits (1417), Expect = e-160
 Identities = 352/937 (37%), Positives = 525/937 (56%), Gaps = 48/937 (5%)

Query: 1   MLTRMGIKGRVLLLTLLPTSLMASLLGGYFTWMQLSELQTQLLQRGEMIAEQLAPLVAPA 60
           M  R G++ RV+ LTL PT ++  LL   F++ +  +L+TQ++  G  I E LA     A
Sbjct: 1   MTQRYGLRARVMTLTLAPTLIIGLLLSALFSFNRYHDLETQVINSGASIIEPLAIASEDA 60

Query: 61  LSARNTELLERIATQSLEQPD--VRAVSFLSPERAPLA----HAGPTMLNQPPVGNSSHL 114
           L  ++ E + RI + +  +    VR+++              H     L  P       L
Sbjct: 61  LRMQSRESVRRIISYAHRKNSKLVRSIAVFDANHELFVTSNFHPNFEKLMYPKDKPIPFL 120

Query: 115 LQRTGNDATRYLLPVFGRHRNLAGELIPDEADRLLGWVEVELSHNGMLLRGYRSLFASLL 174
                ++ T  L       R +      + A  ++G++ +EL  + + L+ Y+ +F++ L
Sbjct: 121 SSSVIDENTLILRTPIISERTVLDNGDANPATPVMGYIAIELDLSSLRLQQYQEIFSAGL 180

Query: 175 LIAIGLICTAALALRISRTINSPIGQIKQAVAQLKDGNLETRLPPLGSQELDQLASGINR 234
           ++ IG++ +   A R+   +  PI  +K  V +++ G+L+ R+      ELD L  GIN 
Sbjct: 181 VLVIGILLSGVFASRLMYDVTRPITHMKNMVDRIRRGHLDVRIEGKMHGELDTLKKGINA 240

Query: 235 MAETLQNAQEELQHSIDQATEDVRQNLETIEIQNIELDLARKEALEASRIKSEFLANMSH 294
           MA +L     E+QHSIDQAT D+R+ LE +EIQN+ELD+A+K A EA+R+KSEFLANMSH
Sbjct: 241 MAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSH 300

Query: 295 EIRTPLNGILGFTHLLQKSELTPRQLDYLGTIEKSADNLLGIINEILDFSKIEAGKLVLD 354
           E+RTPLNG++GFT  + K++LT  Q DYL TIEKSA+NLL IIN+ILDFSK+EAGKL L+
Sbjct: 301 ELRTPLNGVIGFTRQMLKTQLTNSQADYLQTIEKSANNLLTIINDILDFSKLEAGKLALE 360

Query: 355 SIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPLALVGDPLRLKQILTNLISNAIK 414
           +IPF  +++L++ + + A +AH K LE+   +    P  +VGDPLR++Q+LTNL+ N+IK
Sbjct: 361 NIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIK 420

Query: 415 FTREGTIVARAMIEDEQEDSVQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGT 474
           FT  G I     +   ++D + L+  V+DTGIG+S +    LFQAFSQAD S+SR+ GGT
Sbjct: 421 FTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGT 480

Query: 475 GLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISLNLPKTRDDVEDLPSAPLLGHR-VAVL 533
           GLGLVI+++L+  MGGEI + S   +GS FW +L L  T   + D  +A  L HR + ++
Sbjct: 481 GLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTELPLNDGYNADSLNHRHLLLI 540

Query: 534 ENHELARQALQHQLEDCGLEVTPFNSLESLTNGITSAHQTEQAIDLAVLGVTANDIPPER 593
           E +  A   +Q  L   GLEVT             SA   EQ +   VL    N  P + 
Sbjct: 541 EPNMQAAAIVQQTLVQSGLEVT-----------YRSAIPEEQHVYDYVL---LNLAPSKE 586

Query: 594 LNQ---HLWDLEHLGC--KVLVLCPTTEQMLFNQSVPNPNSQLQAKPACTRKLRRALSDL 648
            N     LW    L     V+V  P+TE  L +Q +     +  +KP   +KL + L+  
Sbjct: 587 TNPTLVELWVQRALAMTHNVIVGVPSTELALADQLMQRYPVKCISKPLSRKKLLQTLA-A 645

Query: 649 ISPRPSRSEPGEPLSSRAPR-VLCVDDNPANLLLVQTLLEDMGARVRAVESGYAAIDAVK 707
             P+ + +   +P + + P  V+ VDDNPANL L+  LL++    V +  SG  AI+  +
Sbjct: 646 QQPQLANTSLPKPQADKLPLCVMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ 705

Query: 708 QDTFDLVLMDVQMPGMDGRQSTEAIRQWESERSGTPLPVVALTAHAMANEKRALLQSGMD 767
              FD++LMD+QMP MDG  + +AI+Q +  R     PV+A+TAHAMA E+  LL++GMD
Sbjct: 706 SRQFDIILMDIQMPHMDGVTACKAIKQLKGYRD---TPVIAVTAHAMAGERDRLLKAGMD 762

Query: 768 DYLTKPISERQLAQVVLKWTGLALRNQ--------GPERVADGL--GPGVQLPVLDHEEG 817
           DYLTKPI E  L QV++ W+      Q        G   +++ L   P  +  ++D    
Sbjct: 763 DYLTKPIEEHILQQVLVHWSPHTRSKQVAKVTPPDGAAVISNALPSSPPAEEAIIDWPVA 822

Query: 818 LRLAAGKADLAADMLAMLLASLEADRLAITIARDANDNNA--LIERVHRLHGATRYCGVP 875
           LR +A K DLA +ML ML+  L      +  A +  +  A  L+  +H+LHG+  Y GVP
Sbjct: 823 LRQSANKEDLAKEMLGMLVDYLREVETVVNTALEDEEYPASDLLHHIHKLHGSCSYSGVP 882

Query: 876 QLRAACHRAETLLKQDDAKAQHALDELDMAIARLASE 912
           +LR  C   E  L+        ++DEL+  +  L  E
Sbjct: 883 RLRKICASLEQALRNG-----ASIDELEPELFELQDE 914