Pairwise Alignments

Query, 242 a.a., transcriptional regulator from Pseudomonas simiae WCS417

Subject, 241 a.a., transcriptional regulatory protein OmpR (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  141 bits (356), Expect = 1e-38
 Identities = 86/230 (37%), Positives = 135/230 (58%), Gaps = 11/230 (4%)

Query: 11  VLTIEDDPVLGAYVQEHLGRCGFHVTWCQNGQQGLQMARNQVFDVVLMDILLPGLDGLSI 70
           +L ++DD  L A ++ +L   G+ V    N +Q  ++   + F ++++D++LPG DGLSI
Sbjct: 8   ILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLIVLDLMLPGEDGLSI 67

Query: 71  LTHLRQSHS-IPVILMSALGAEADRISGFRLGADDYLPKPFSMIELRVRIEAILRRVALD 129
              LRQ  S IP+++++A G E DRI G  LGADDYLPKPF+  EL  RI+A++RR   D
Sbjct: 68  CRRLRQQGSTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQTQD 127

Query: 130 RRPLPSLAPARDDARTLRFDDELCD-----VFHLGHWAGLTRSEYRLLETLHRNAEEVLS 184
              +P  APA+ +A  +RF +   D     ++H      LT  E+ +L+ L  +  E LS
Sbjct: 128 ---VPG-APAQQEAE-IRFGEFSLDLATREMYHGDEAIVLTSGEFAVLKVLVTHPREPLS 182

Query: 185 KPFLYQHVLQRGYAPHDRSLDMHISQIRRKLKAIGYTEREVRTVWGKGYV 234
           +  L      R Y+  +RS+D+ +S++RR ++      R ++TVWG GYV
Sbjct: 183 RDKLMNLARGRDYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYV 232