Pairwise Alignments

Query, 605 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  368 bits (944), Expect = e-106
 Identities = 230/606 (37%), Positives = 340/606 (56%), Gaps = 36/606 (5%)

Query: 3   EPLAHDTLIQESWRRCRAFGLDHQSTPSFDQLPAEGISQLLESQHSLVQTTHQEVLPYYE 62
           + L+H   +  SW+R    GL  QS     +L    + +  +    L+ T  +  LP + 
Sbjct: 5   QQLSHVNWLVNSWQRSEQAGLTQQSRAQDIRLSDNKLKERRQELAGLIDTVSRFALPLFY 64

Query: 63  NILSNSNCLIMLADNQGQVLTSWGTQRFIDPKLARGFNPGASWMERSSGTNAIGTALACA 122
            + ++S+  ++L D  G ++ SWG  RF +       + GA W E   GTNAIGTAL   
Sbjct: 65  QLFAHSDSRLILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTALIEQ 124

Query: 123 QAVHIEHDEHFLKANRFMTGSAAPIFDAQREIIAVLDVSSDSYLPPSHTLGMVKMMSQTV 182
           + + +  ++HF++ + F++ SA+PIFD   ++I VLD++S+       T  +V+ M Q V
Sbjct: 125 KPISVIGEQHFIQHHHFISCSASPIFDYTGQLIGVLDITSEQQKHTLSTQVVVQNMVQLV 184

Query: 183 ENRLILNLFRGEHFQLTFNTGLSNLDSQWAGLLIFDESGQVLSANRRADNLLGISLSRVM 242
           EN+L+  +  G H ++      S L S W G++I DESGQ+L+ N+ A  LL  +  RV+
Sbjct: 185 ENQLLNQIPHG-HVRIDLACEPSLLSSGWQGVIIADESGQILAHNQVAGQLL--AQGRVI 241

Query: 243 IDSLFKVSLLELLNQPEGLPFSLQAAGRNRFQCVLRRPKQMPVQARVFTEPTPPTPASIG 302
             S+ +V     L +P       Q      +       KQ   +A         TPAS  
Sbjct: 242 GQSVEQV-----LPRP-------QTHASFIYTTTPLHSKQHRTRAL--------TPAS-- 279

Query: 303 LKTLHFGDVRVEKAVRQAERLLEKDIPLLIHGETGVGKEVFVKALHQASSRSQKAFIAVN 362
              LHFGD  VE+  +QA R+++KDI LLI G+TGVGK  FVKALH+ S R     +AVN
Sbjct: 280 --DLHFGDAEVERCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVN 337

Query: 363 CAAIPAELVESELFGYEKGAFTGANQKGSIGLIRKADKGTLFLDEIGDMPLPTQARLLRV 422
           C A+  ELVE+ELFGY  GAFTGA+ KG  G +R ADKG LFLDEI D+PL  Q+RLL V
Sbjct: 338 CGALAKELVEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHV 397

Query: 423 LQERCVQPVGSSELFPVDLRIISATNRALRELVQAGRFREDLYYRIGGLTLELPPLRERT 482
           LQ++ V PVGS+    VD++II+AT++ L +LV  G FR+DLYYR+  L +ELP  ++R 
Sbjct: 398 LQDKTVLPVGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQRQ 457

Query: 483 DKQALFQQLWQQHREPTQWAGLSAEVLALFEQHPWPGNLRQVSSVLQVALAMAE-EQPIR 541
           D+QAL   + +++ +  Q   +  +++     + WPGNLR++ S+++VA  MAE E  + 
Sbjct: 458 DRQALIHHIHRRYSDAGQ--QICGDLMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLT 515

Query: 542 AEHLPDDFFVDLKVDPPLPASEYLDDSI------DLNQRLKAAGGNISHLARELGVSRNT 595
             HLP      L    P    +     I       L +  +A  GNIS  +R LG+SRNT
Sbjct: 516 FNHLPTHLAQKLSHAAPTATEDDQQKDIKSTVEASLLKTYQATQGNISQTSRLLGLSRNT 575

Query: 596 LYKRLR 601
           +Y++L+
Sbjct: 576 IYRKLK 581