Pairwise Alignments

Query, 251 a.a., porin from Pseudomonas simiae WCS417

Subject, 229 a.a., aquaporin Z (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  278 bits (711), Expect = 7e-80
 Identities = 134/223 (60%), Positives = 168/223 (75%), Gaps = 1/223 (0%)

Query: 1   MQKRLTAEFIGTFWLTFGGCGSAILAAAFPELGIGFVGVSLAFGLTVLTMAYAVGGISGG 60
           M +++ AEF+GT WL  GGCGSA+LAAAFPE+GIG +GVSLAFGLTVLTMA+A+G ISG 
Sbjct: 1   MSQKMAAEFLGTLWLVLGGCGSAVLAAAFPEVGIGLLGVSLAFGLTVLTMAFAIGHISGC 60

Query: 61  HFNPAVTLGLWAGRRVAAGEVLPYIAAQVAGAIGASAALYLIANGQPDFAI-GGFAANGY 119
           H NPAV+ GLWAG R    E+LPYI AQVAG I  +  LYLIA+GQ  F++  GFA+NG+
Sbjct: 61  HLNPAVSFGLWAGGRFPTSELLPYIIAQVAGGIAGAGVLYLIASGQEGFSLAAGFASNGF 120

Query: 120 GPLSPGLFDMKAALLAECIATFFFLFIIMRVTSSGAVPGFAPIAIGLALTLIHLVLIPVT 179
           G  SPG + M + ++ E + T FFL +I+  T   A  GFAPIAIGL LTLIHL+ IP++
Sbjct: 121 GEHSPGGYSMISVMICEIVMTLFFLLVILGSTDERAPKGFAPIAIGLCLTLIHLISIPIS 180

Query: 180 NTSVNPARSTGPALFAGGEYLAQLWLFWLAPMVGGVMGALAAR 222
           NTSVNPARSTGPALF G   ++QLWLFW AP++G ++  +  R
Sbjct: 181 NTSVNPARSTGPALFVGDWAVSQLWLFWAAPIIGAILAGVIYR 223