Pairwise Alignments

Query, 352 a.a., histidine kinase from Pseudomonas simiae WCS417

Subject, 485 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  123 bits (309), Expect = 9e-33
 Identities = 65/178 (36%), Positives = 105/178 (58%), Gaps = 2/178 (1%)

Query: 165 ICYRQALTLARHKRELLALSRTDSLSGLLNHGAWKDHLEIEFQRCRRDSMGAVIALIDID 224
           I +   +TL R++R+L  ++ TD L+G  N   ++++      + +       I LIDID
Sbjct: 305 ILFISNMTLGRYQRKLEIMASTDKLTGAANRQVFEEYFHQALDKAKLSQTSISILLIDID 364

Query: 225 HFKTINDTYGHVTGDIVLRQLSKVLRQNLRATDLAGRYGGDEFCVILPGMPLNRATEVMD 284
           HFK +ND+YGH  GD+VL+ ++ +LR  L+  D+  R+GG+EF V+LP M L+RA E+ +
Sbjct: 365 HFKKVNDSYGHSVGDLVLKTVTNLLRSQLKPQDILCRWGGEEFLVLLPEMDLSRAAELAE 424

Query: 285 ALRDRFNALAYAQDPT-LRVSLSIGLAPYQPTHADSTSWLNDADQALYDAKSSGRNRV 341
             RD  +      +   + +++SIG+A YQ     +   +  AD ALY AK +GRN+V
Sbjct: 425 RFRDSISQRELKVNGVHIAITVSIGVAEYQKLE-PAEDLIKRADLALYQAKEAGRNQV 481