Pairwise Alignments

Query, 352 a.a., histidine kinase from Pseudomonas simiae WCS417

Subject, 625 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  110 bits (276), Expect = 8e-29
 Identities = 63/167 (37%), Positives = 100/167 (59%), Gaps = 3/167 (1%)

Query: 178 RELLALSRTDSLSGLLNHGAWKDHLEIEFQRCRRDSMGAVIALIDIDHFKTINDTYGHVT 237
           ++L   S  DSL+G+ N  A+   L  E +  RR      + ++DID FK+IND +GH+ 
Sbjct: 448 QKLTEQSTIDSLTGVKNRSAFDKRLLAESRISRRQETPIALLMLDIDRFKSINDQFGHLA 507

Query: 238 GDIVLRQLSKVLRQNL-RATDLAGRYGGDEFCVILPGMPLNRATEVMDALRDRFNALAYA 296
           GD  L+ +++ L+Q+L R TDL  R+GG+EF +ILP    + A +V +++RD  + +   
Sbjct: 508 GDQALKLIAQTLQQHLKRPTDLVSRFGGEEFAIILPNTTADGALQVAESIRDTVSCIGLT 567

Query: 297 -QDPTLRVSLSIGL-APYQPTHADSTSWLNDADQALYDAKSSGRNRV 341
            +   + +++SIG+ A        ST  L  AD+ALY AK+SGRN+V
Sbjct: 568 WEGKPIPLTVSIGVSADVIMNEQHSTELLEQADKALYQAKNSGRNQV 614