Pairwise Alignments

Query, 257 a.a., polysaccharide deacetylase from Pseudomonas simiae WCS417

Subject, 251 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  144 bits (362), Expect = 2e-39
 Identities = 77/219 (35%), Positives = 126/219 (57%), Gaps = 5/219 (2%)

Query: 28  AYLTLIIDDLGQNLPRDRRVLALPGPVTTAIMPDTPHAAEFAREAHKAGKIVILHMPMDP 87
           A + LIIDD+G     D  VL+LP  VT +++P TP +++ A+ AH  G  ++LH+PM  
Sbjct: 20  AQIALIIDDIGYR-HTDEAVLSLPSSVTLSVLPHTPLSSKLAKAAHANGHEIMLHLPMQA 78

Query: 88  ----ATGPFAWHPELSIEELGKRLDAAFQAVPYTAGINNHMGSRMTAQPAAMAWLMAELQ 143
               A G       ++  ++   + AA  +VP+  G NNHMGS +T     M W+M  L+
Sbjct: 79  LNGKALGVGGLTNNMNEAQIRSSVLAAMASVPFAKGANNHMGSLLTQLDDPMLWVMETLK 138

Query: 144 RRNKFFVDSRTSAQTVAAAEAQKIGLAHVSRDVFLDDERTEAAITTQLQTAIKLAHKQGS 203
           ++  +FVDS T+  T A   A ++G+  + R +FLD++ +  A+  Q    I  AH QGS
Sbjct: 139 QKQFYFVDSMTTKFTKAGDRADQLGVPLLRRQLFLDNDVSTQALERQFNLMISQAHAQGS 198

Query: 204 VVMIGHPYPQTLAVLERELPKLKAQGVDWINIKLMISVR 242
           +V I HPYP+T+  L+  L +LKA+G++ +    ++ ++
Sbjct: 199 LVAIAHPYPETIHFLKANLARLKAEGIELVPTSRLLPIK 237