Pairwise Alignments

Query, 600 a.a., histidine kinase from Pseudomonas simiae WCS417

Subject, 583 a.a., nitrate/nitrite two-component system sensor histidine kinase NarQ from Vibrio cholerae E7946 ATCC 55056

 Score =  234 bits (598), Expect = 6e-66
 Identities = 178/590 (30%), Positives = 290/590 (49%), Gaps = 29/590 (4%)

Query: 1   MFDWLRSSLPARAGLAVILIAILALASSLSAGLIAWFSQGDAAAINTAGSVRMETYHLSW 60
           +F  +R SL      A++LI  L+  ++  A +    S  DA A+N +GS+RM++Y L++
Sbjct: 10  LFTPVRHSLTRTMAKAMLLILFLSALTTGVAIVTLASSLNDAEAVNVSGSMRMQSYRLAY 69

Query: 61  KLAAGARPDEVAEVSQSLQRRLDSQSLKAVLEDGPRSALLQSYQQIQRRWNDELRPAVMR 120
            +   +  D  A +    +  L S S+ A+L+    S + Q Y Q+  RW+ EL+  +  
Sbjct: 70  DIQTQSH-DYKAHIFL-FENSLYSPSMLALLDWTVPSDIQQDYYQLIERWH-ELKKVLNS 126

Query: 121 GDAVLFQVSAPAFVEQLNQFVSLLQQQSEHKQSWQQAIQGLALFSTLIILLIGLYELQYG 180
                +      FV  ++ FV  LQ+ SE K     A+    L     + L  +Y ++  
Sbjct: 127 DQKAQYLDQVAPFVSLVDGFVLKLQRFSERKLIALAAVGSFGLGGIFAVSLFVVYYIREQ 186

Query: 181 VVTPLQELVHATRRFRDGNYQTRVNHRSEDELGQLALSFNAMAETIEASHRTLEAQVQLK 240
           VV PL  +V A+ + ++ N+   +   S  E+G L+ +FN+MA  +   +R LE  V  K
Sbjct: 187 VVRPLNAMVDASEKIKNRNFDVMLEETSSTEMGILSRTFNSMAGDLGKLYRGLEHAVNEK 246

Query: 241 TLNLQQANAALELLYQSSRSLATRLANAEGLDELIRRFQKRLPGLRLSLCLQGHFLAPAQ 300
           T  LQ AN +L++LY SS+ L      A     ++R +   L G+     L+      A 
Sbjct: 247 TNKLQMANQSLQVLYHSSQELTASRITASNFQTILRHWVA-LEGI---CALRLEIEEEAG 302

Query: 301 QMLALHGEHSRNVCAIGDCATCERHHAAPPEVFSISNQGAELGELKAHFLDGHPPQDWEK 360
           + L L          +    T + HH               LG L  ++  G P  D  +
Sbjct: 303 KPLILQEGKPSGAVMLQTPLTLDGHH---------------LGFL--YWEAGSPEPD--R 343

Query: 361 QLIQALANLIGTSLSLKRQREQDHRLLLLEERTIIARELHDSLAQALSYMKLQVS---RM 417
            LI   A ++  ++   + + Q  +LLL+EER  IARELHDSLAQ+LSY+K+Q++   R 
Sbjct: 344 ALIDNFALILSRAIYYNQAQRQAEQLLLMEERATIARELHDSLAQSLSYLKIQLTLLKRS 403

Query: 418 QTLIRRGEPVETLACVTSELRDGLNNAYRQLRELLTTFRLQIHDAGLVQELRETAEEFSR 477
            T ++    +     +  E+  GL++AY QLRELLTTFRL + +    Q L     + S 
Sbjct: 404 VTPLKSDGDLSKTENIIREIDKGLSDAYTQLRELLTTFRLTLTEGSFGQSLLGMLTQLSG 463

Query: 478 RGEFQVHLHVDALAFQLSASEQIHVLQITREALSNCLRHAHAQNAWLQLRQVGETVSLCI 537
           + + ++ L+    +  L A +Q+H++Q+ REA  N ++HA A    +  ++    V + I
Sbjct: 464 QTDAKIELNNALSSIALDAHQQVHLVQLIREATINAIKHAKATKIKVNCQEQQGRVQVTI 523

Query: 538 EDDGRGFGGDVDQREHHGLTIMDERARSLHGHLDISPREPQGTRVQLRFQ 587
           EDDG GF     +  H+G++IM ERA  L G L +     +G +V L +Q
Sbjct: 524 EDDGVGFDLQDHKINHYGMSIMQERAARLRGELKVESAPGKGCKVVLTYQ 573