Pairwise Alignments

Query, 539 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 536 a.a., Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) from Pseudomonas fluorescens FW300-N2E2

 Score =  352 bits (904), Expect = e-101
 Identities = 220/540 (40%), Positives = 324/540 (60%), Gaps = 8/540 (1%)

Query: 4   LTTAQRIVIGFAIAPLALVGLVFYALHDLATLKQQSEQIVQQDWPKIAPIMVIATGVRDN 63
           +  A R  +GFA+    ++ L  +AL  ++ ++   E I Q   P I  +          
Sbjct: 1   MNIAPRAFLGFALIGALMLALGVFALTQMSKIRTSGENIAQNSVPSIKALNEFTQLTLRL 60

Query: 64  GRNTRDLLIDQD---NQQAQEAIGGTRQRITEAFATLEPLLDTAEGKAAYATLKTHREAY 120
              +  LL++++    Q+  + +    Q+I  A  T E L+  ++ +AAY  L      Y
Sbjct: 61  RVLSYRLLVNREPDIQQKTYDLVEQRSQQIRAAQTTYEKLISASDERAAYDQLVQLLGQY 120

Query: 121 VAAFTQVQALIKQGAREQGLAQLKQQVMPAELAVFKSLDALMAMQGRLFAEREQAAQVLY 180
                +++ L +    ++  A L  +++    A+  ++D L+ +         + A   Y
Sbjct: 121 RQLEERMKTLSRNNQVDELRALLNTELLSNSDAINAAIDRLVEINNLQAEALNKGAAQQY 180

Query: 181 DEARRNMIGLFLLCLALVVAAAIIVTRSVIRPLGGEPDEAARVLSHIAQGDLTIVVPVGN 240
             A   ++ L L+   L +  A ++T S+ +P+    D A      IA+G+LT  + V  
Sbjct: 181 SSAFNWVVTLLLIATGLTLLFAWLLTNSITKPIANALDAA----EEIAKGNLTRPITVDG 236

Query: 241 SAE-GSVMRNLHQMQQNLNQMVRHIATSVDGVASSSEELSAVSSQTSSSLQSQGQEIEQA 299
           S E G ++R +  MQ+ L   ++ I+ S   +AS++EEL++V+ +++  L  Q  EIEQA
Sbjct: 237 SDEAGRLLRAMSTMQEKLRDTLQRISGSATQLASAAEELNSVTDESARGLTQQNNEIEQA 296

Query: 300 ATAVNEMTAAVDEVARNAVSTSEASRLSEQTAQRGRAQVQETVASINTLATGVVETSERI 359
           ATAVNEMT+AV+EVARNAVSTSEAS+ +  +A  GR  VQETV++I  ++  V  T+  I
Sbjct: 297 ATAVNEMTSAVEEVARNAVSTSEASKNATTSAGDGRDLVQETVSAIERMSADVQSTAALI 356

Query: 360 QQLAGRVQDISSVLEVIRSIADQTNLLALNAAIEAARAGDAGRGFAVVADEVRALAHRTQ 419
             LA   +DI  VL+VIR +ADQTNLLALNAAIEAARAG+AGRGFAVVADEVRALAHRTQ
Sbjct: 357 GNLADESRDIGKVLDVIRGLADQTNLLALNAAIEAARAGEAGRGFAVVADEVRALAHRTQ 416

Query: 420 ASTQEIEQMIGNIRQDTEHAVAAMHSSSERVQATLSVAQRSGEALDEITRSISQINERNM 479
            ST EIE+MIG+I+  TEHAV +M +S+ER ++TL++A+ +G +LD I  +I +INERN+
Sbjct: 417 QSTSEIERMIGSIQSGTEHAVDSMRNSTERAESTLNIARGAGMSLDTINTAIVEINERNL 476

Query: 480 MIASATEEQALVAREVDRNLVGIRNLSQQVLQGALHTETAGHDLAGMAGALHQTVARFKV 539
           +IASA EEQA VAREVDRNLV IR+LS Q   GA  T  A  +L+ +A  L+  V RF +
Sbjct: 477 VIASAAEEQAQVAREVDRNLVNIRDLSVQSATGANQTSAASAELSRLAVDLNNMVGRFSL 536