Pairwise Alignments

Query, 1023 a.a., DNA polymerase from Pseudomonas simiae WCS417

Subject, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

 Score =  343 bits (880), Expect = 4e-98
 Identities = 296/1062 (27%), Positives = 492/1062 (46%), Gaps = 89/1062 (8%)

Query: 3    YAELHCLSNFSFQRGASSALELFERAKRQGYSALAITDECTLSGIVRAWQAAKAVELPLI 62
            +  L   S+FS   G S    L ++    G  A+A+TD   L G+V+ +  A    +  I
Sbjct: 6    FIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPI 65

Query: 63   IGSEVRI------DNGPKLVLLVEDLSGYQHLCRLITLARRRAEKGSYRLLREDF-DQPL 115
            IG++  +      D   KL LL ++  GY++L  LI+ A  R       ++ + +  +  
Sbjct: 66   IGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVEHA 125

Query: 116  PGLLALWVAEDSDT-----QADSQWLRRT-------FGERLWLAVHLHCGQNDARHLEQR 163
             GL+ L   +  +      + + Q + R        F +  +L +      ++  +L   
Sbjct: 126  EGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFA 185

Query: 164  LQLAASLHLPAVACGDVHMHARGRRALQDTMTAIRHHVPVAEAGTRLHPNGERHLRSLDA 223
            L +A    LP VA  +V           +   AI     + +     + + +++LRS   
Sbjct: 186  LDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAE 245

Query: 224  LAALY---PQPLLDETETIARRCTFDLSQLRYHYPHELVPAGHNA-QSWLRAVTEEGIAK 279
            +  L+   P+ L +  E IA+RC   +    Y  P+   P G  A + +L   + EG+ +
Sbjct: 246  MCELFADIPEALANSVE-IAKRCNVTVRLGEYFLPN--FPTGGMAIEDFLVMKSREGLEE 302

Query: 280  R----WPQG-VDAKTA----QQINSELELISELGYESYFLTVHDIVQFARSRSI-LCQGR 329
            R    +P   V AK      +++  EL++I+++G+  YFL V + +Q+++   I +  GR
Sbjct: 303  RLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGR 362

Query: 330  GSAANSAVCYALGITEIDPSLTSMLFERFLSRERNEPPDIDVDFEHERREEVLQYVFQRY 389
            GS A S V YAL IT++DP    +LFERFL+ ER   PD DVDF  ++R++V+ +V + Y
Sbjct: 363  GSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMY 422

Query: 390  GRTRAALTAVVSSYHASGAVRDVAKALGLP---PDQINALAD-----CCGRWSDAAPPLD 441
            GR   +      +  A   +RDV + LG P    D+I+ L          +   A P L 
Sbjct: 423  GRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAEPALQ 482

Query: 442  RLREGGFDPDSPILRRVLTLTQQLIGFPRHLSQHPGGFVISEYPLDTLVPVENAAMAERT 501
             L    +D D  + + ++   + L G  R+  +H GG VIS   +    P+   A     
Sbjct: 483  EL----YDADEEV-KELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFP 537

Query: 502  IIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDL----LRRHRNRDLALATIPKEDPATY 557
            + Q+DK+D++  GL+K D L L  L+ I     L    L++     + +  IP +D  ++
Sbjct: 538  VTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSF 597

Query: 558  AMISKADTIGVFQIESRAQMSMLPRLKPQKFYDLVIEVAIVRPGPIQGGMVHPYLRRRNK 617
              +  A T  VFQ+ESR    ++ RL+P  F D++  VA+ RPGP+Q GMV  ++ R++ 
Sbjct: 598  RNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHG 657

Query: 618  EEETTYPSPE-----LKVVLERTLGIPLFQEQVMQIAMVAADYGPGEADQLRRSMAAWKR 672
             E  +YP  +     LK +LE T GI L+QEQVMQIA V + Y  G AD LRR+M   K+
Sbjct: 658  REAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KK 716

Query: 673  HGGLEPHQERLRTGMLKNGYSEAFAAQIFEQIKGFGSYGFPESHAASFALLTYASCWLKC 732
               +   +   + G  KNG     A +IF+ ++ F  YGF +SH+A++AL++Y + WLK 
Sbjct: 717  PEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKT 776

Query: 733  HEPAAFACALINSWPMGFYSPDQILQDARRHRLQIRPVDVQASDWDCSLEPIDGAQPAIR 792
            H PA F  A++ +          ++ + +   L + P D+ +  +  +++       AI 
Sbjct: 777  HYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDD----NGAIV 832

Query: 793  MGLRMISGFREEDARRIEAARHRRA-FSDIADLDDRAGL---DARAQALLADAGALRAL- 847
             G+  I G  E     I  AR++   F D+ D   R  L   + R    L  AGAL  L 
Sbjct: 833  YGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLG 892

Query: 848  ----------------AGNRHKARWEVAGVHKQLGLFAGLPSP-DEAVVELPSPTVGEDL 890
                            A   H+A  E  G     G+    P   ++   ++P       L
Sbjct: 893  PHRAAMMASVDDAVRAASQHHQA--EAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRL 950

Query: 891  HADYATVGTTLGPHPLALLRAELRKRRCRSSQELMAVEHGRNVSVAGLVTGRQRPGTASG 950
              +  T+G  L  HP+     EL K       E       ++++VAGLV   +   T  G
Sbjct: 951  EGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRG 1010

Query: 951  --VTFVTLEDEFGNLNVVVWRDLAERQRQALVGSRLMKVDGR 990
              +  +TL+D  G + V+++ +  +R  + L   +++ V G+
Sbjct: 1011 TRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQ 1052