Pairwise Alignments

Query, 1023 a.a., DNA polymerase from Pseudomonas simiae WCS417

Subject, 870 a.a., DNA polymerase III subunit alpha from Synechococcus elongatus PCC 7942

 Score =  312 bits (800), Expect = 6e-89
 Identities = 223/762 (29%), Positives = 373/762 (48%), Gaps = 57/762 (7%)

Query: 1   MSYAELHCLSNFSFQRGASSALELFERAKRQGYSALAITDECTLSGIVRAWQAAKAV-EL 59
           MS+  LH  S++S   GAS   +L  RAK  G  A+A+TD   + G +   +  K    +
Sbjct: 1   MSFVGLHMHSDYSLLDGASQLPDLVARAKELGMPAIALTDHGVMYGAIELLKVCKNQGNI 60

Query: 60  PLIIGSEVRIDNGP-----------KLVLLVEDLSGYQHLCRLITLARRRAEKGSYRLLR 108
             IIG+E+ + N P             ++L ++  GYQ+L +L +++  +  KG     R
Sbjct: 61  RPIIGNEMYVINSPIDDPNPRVRKYHQIVLAKNKKGYQNLVKLTSISHLQGFKGRGIFAR 120

Query: 109 -----EDFDQPLPGLL------------ALWVAEDSDTQADSQWLRRTFGERLWLAVHLH 151
                E  ++   GL+            A+  +     +  + W +  FGE  +L +  H
Sbjct: 121 PCIDKEHLEKYREGLIVTSACLGGEIPQAILQSRPDVARRVAAWYQERFGEDFYLEIQDH 180

Query: 152 CGQNDARHLEQRLQLAASLHLPAVACGDVHMHARGRRALQDTMTAIRHHVPVAEAGTRLH 211
               D     + +++A  L +  VA  D H  +       D +  I+    V E   RL 
Sbjct: 181 GSPEDRIVNVEIVRIAQELGIELVATNDSHFISCFDVEAHDALLCIQTGKLVVE-DKRLR 239

Query: 212 PNGERHLRSLDALAALYPQPLLDETETIARRCTFDLSQLRYHY--------PHELVPAGH 263
            +G  +L+S + +  L+   L D+    A   T  ++     Y        P   VP G+
Sbjct: 240 YSGTEYLKSAEEMHQLFRDHLPDDVIAKAIANTLVIASKIEDYNILGEPKIPTFPVPDGY 299

Query: 264 NAQSWLRAVTEEGIAKRWP----QGVDAKTAQQINSELELISELGYESYFLTVHDIVQFA 319
           N ++++  V  +G+A+R      +  +     ++  E++++ E+G+ SYFL V D ++FA
Sbjct: 300 NEETYMAEVARQGLAERLNCDRYEDCEEAYRDRLEYEIKMMHEMGFASYFLVVWDYIKFA 359

Query: 320 RSRSI-LCQGRGSAANSAVCYALGITEIDPSLTSMLFERFLSRERNEPPDIDVDFEHERR 378
           R  +I +  GRGSAA S V Y +GIT IDP    +LFERFL+ ER   PDID DF  ++R
Sbjct: 360 RDNNIPVGPGRGSAAGSLVAYCMGITNIDPVHHGLLFERFLNPERKSMPDIDTDFCIDQR 419

Query: 379 EEVLQYVFQRYGRTRAALTAVVSSYHASGAVRDVAKALGLPPDQINALADCC--GRWSDA 436
           ++V+ YV ++YG  R A     +   +   ++DVA+ L +P  + + +A      R   A
Sbjct: 420 DKVIDYVTKKYGEDRVAQIITFNRMTSKAVLKDVARVLDIPYGEADRMAKLIPVARGKPA 479

Query: 437 A--------PPLDRLREGGFDPDSPILRRVLTLTQQLIGFPRHLSQHPGGFVISEYPLDT 488
                     P    +E  ++ D+ + +  + +  ++ G  +    H  G VIS  PLD 
Sbjct: 480 KLKVMISDQTPAPEFKEK-YEKDARV-KHWVDMALRIEGTNKTFGVHAAGVVISAVPLDE 537

Query: 489 LVPVENAAMAERTIIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDLLRRHRNRDLALAT 548
           +VP++     +  I Q+  +D++A GLLK+D L L  L+ I++  DL++    + +    
Sbjct: 538 IVPLQRNNDGQ-VITQYYMEDIEACGLLKMDFLGLRNLTMIQKAIDLVQETSGQAIDPDR 596

Query: 549 IPKEDPATYAMISKADTIGVFQIESRAQMSMLPRLKPQKFYDLVIEVAIVRPGPIQGGMV 608
           +P +DP TY +++K D  GVFQ+ES     ++  LKP    D+   +A+ RPGP+  G++
Sbjct: 597 LPMDDPKTYQLLAKGDLEGVFQLESSGMRQIVRDLKPSNLEDISSILALYRPGPLDAGLI 656

Query: 609 HPYLRRRNKEEETTYPSPELKVVLERTLGIPLFQEQVMQIAMVAADYGPGEADQLRRSMA 668
             ++ R++  E   Y    L+ +L  T GI ++QEQ+M+IA     Y  GEAD LRR+M 
Sbjct: 657 PKFINRKHGREAIDYADQMLQPILNETYGIMVYQEQIMKIAQDMGGYTLGEADLLRRAMG 716

Query: 669 AWKRHGGLEPHQERLRTGMLKNGYSEAFAAQIFEQIKGFGSY 710
             K+   +  HQ     G  KNG +E  AA++F+Q+  F  Y
Sbjct: 717 K-KKMSEMVKHQSTFVEGAKKNGVAEKVAAELFDQMVLFAEY 757