Pairwise Alignments

Query, 1023 a.a., DNA polymerase from Pseudomonas simiae WCS417

Subject, 1116 a.a., DNA polymerase III subunit alpha from Sinorhizobium meliloti 1021

 Score =  833 bits (2153), Expect = 0.0
 Identities = 472/1059 (44%), Positives = 642/1059 (60%), Gaps = 42/1059 (3%)

Query: 3    YAELHCLSNFSFQRGASSALELFERAKRQGYSALAITDECTLSGIVRAWQAAKAVELPLI 62
            + EL   +NFSF  GA+ A E+   AK+ G + L I D  +++G+VRA   AK    P  
Sbjct: 7    FCELGARTNFSFLEGAAPAEEMVVFAKKAGLAGLGIADRNSVAGVVRAHAKAKVEGYPFQ 66

Query: 63   IGSE-VRIDNGPKLVLLVEDLSGYQHLCRLITLARRRAEKGSYRLLREDFDQPLPGLLAL 121
             G+  V  D  P ++   ++  G+ HLCRL++    R++KG   L   D  +    LL +
Sbjct: 67   PGARLVFADGTPDILAYPKNRRGWGHLCRLLSAGNLRSKKGDCTLHLADLLEWQEELLLI 126

Query: 122  WVAEDSDTQADSQ-----WLRRTFGERLWLAVHLHCGQNDARHLEQRLQLAASLHLPAVA 176
             +  +   + +S       L+   G RL+L +  H    D         +A    +  +A
Sbjct: 127  VMQGEGRPEPESLEVLLGTLKEHAGNRLYLGLAPHYDGFDRHDFAVLAAIARKAGIGLLA 186

Query: 177  CGDVHMHARGRRALQDTMTAIRHHVPVAEAGTRLHPNGERHLRSLDALAAL---YPQPLL 233
              D   H    R L D +T+IR HVP+A AG  L  N ERHL+    +A L   YP+ + 
Sbjct: 187  TNDALYHDPHYRPLADVVTSIREHVPIAGAGFLLQKNAERHLKGPREMARLFSDYPEAIA 246

Query: 234  DETETIARRCTFDLSQLRYHYPHELVPAGHNAQSWLRAVTEEGIAKRWPQGVDAKTAQQI 293
            + T    R   F L +L + YP E       A+S LR +  EG A+R+P+GV  K  +QI
Sbjct: 247  N-TRKFFRELAFSLDELSHQYPDENADGETPAES-LRRLVAEGAAERYPEGVPEKVMRQI 304

Query: 294  NSELELISELGYESYFLTVHDIVQFARSRSILCQGRGSAANSAVCYALGITEIDPSLTSM 353
            + ELELI +  YE YFLTVH +V+FARS +ILCQGRGSAANS+VC+ LGIT++DP   ++
Sbjct: 305  DYELELIHDKKYEPYFLTVHKLVKFARSVNILCQGRGSAANSSVCFCLGITDVDPQKFTL 364

Query: 354  LFERFLSRERNEPPDIDVDFEHERREEVLQYVFQRYGRTRAALTAVVSSYHASGAVRDVA 413
            LF+RFLS++R+EPPDIDVDFEHERREEV+QY+++ YG+  A LTA V SY +  A R+VA
Sbjct: 365  LFDRFLSKDRDEPPDIDVDFEHERREEVIQYIYRTYGKEHAGLTAAVISYRSRSAGREVA 424

Query: 414  KALGLPPDQINALADCCGRWSDAAPPLDRLREGGFDPDSPILRRVLTLTQQLIGFPRHLS 473
            KA GL  D  +AL      W  +    ++ +  G D   P+ RRVL     L+ FPRHLS
Sbjct: 425  KAFGLSEDVQSALVSSIWGWGTSPFTEEQAKGAGLDAADPLTRRVLAYASLLMNFPRHLS 484

Query: 474  QHPGGFVISEYPLDTLVPVENAAMAERTIIQWDKDDLDAVGLLKVDILALGMLSAIRRCF 533
            QH GGFVI+   LD +VP+ N AM +R +I+WDKDDLD + +LKVD+LALGML+ + + F
Sbjct: 485  QHVGGFVITRDRLDEVVPIMNTAMPDRYMIEWDKDDLDELKILKVDVLALGMLTCLAKGF 544

Query: 534  DLLRRHRNRDLALATIPKED-PATYAMISKADTIGVFQIESRAQMSMLPRLKPQKFYDLV 592
             LL  H    + LA I ++   A Y MI +ADT+GVFQIESRAQMSMLPRL+P++ YDLV
Sbjct: 545  KLLEAHYGEPITLAEIYQDHRDAVYDMICRADTVGVFQIESRAQMSMLPRLQPREMYDLV 604

Query: 593  IEVAIVRPGPIQGGMVHPYLRRRNKE---EETTYPSPELKVVLERTLGIPLFQEQVMQIA 649
            IEVAIVRPGPIQG MVHPYL+RR  +   E   YPSPELK VLERTLG+PLFQEQ MQIA
Sbjct: 605  IEVAIVRPGPIQGNMVHPYLKRREAQRRGEAVVYPSPELKAVLERTLGVPLFQEQAMQIA 664

Query: 650  MVAADYGPGEADQLRRSMAAWKRHGGLEPHQERLRTGMLKNGYSEAFAAQIFEQIKGFGS 709
            + AA + P EAD+LRR+MA +KR G +   + ++  GM+ N Y   FA + F QIKGFG 
Sbjct: 665  ITAAGFSPSEADRLRRAMATFKRTGTIHTFERKMVEGMVANDYEREFAERCFNQIKGFGE 724

Query: 710  YGFPESHAASFALLTYASCWLKCHEPAAFACALINSWPMGFYSPDQILQDARRHRLQIRP 769
            YGFPESHAASFA L YAS WLK + P  F  AL+N+ PMGFY+P Q+++DAR H +++ P
Sbjct: 725  YGFPESHAASFASLVYASAWLKTYYPDIFCAALLNAQPMGFYAPAQLVRDAREHGVRMLP 784

Query: 770  VDVQASDWDCSLE------------------PIDGAQPAIRMGLRMISGFREEDARRIEA 811
            VD+  SDWD  LE                   +   + A+R+G R++ G ++ D + +  
Sbjct: 785  VDINHSDWDALLEGEGAFDKNAVHPRHASMREVIKTRKAVRLGFRLVKGLKQTDMKAL-V 843

Query: 812  ARHRRAFSDIADLDDRAGLDARAQALLADAGALRALAGNRHKARWEVAGVHKQ-----LG 866
            AR    +  + DL  R+GL       LADA A R++  +R  A W V  + +Q     L 
Sbjct: 844  ARRGEGYRSVHDLWLRSGLSRSVLERLADADAFRSIGLDRRAALWAVKALDEQSAVERLP 903

Query: 867  LFAGLPSPD---EAVVELPSPTVGEDLHADYATVGTTLGPHPLALLRAELRKRRCRSSQE 923
            LF G  S D   E  V LP    GE +  DY T+  +L  HP++ +R +  +R    S++
Sbjct: 904  LFEGAGSDDLQIEPKVALPDMPAGEQVIHDYRTLTLSLKAHPVSFMREDFSRRGILRSRD 963

Query: 924  LMAVEHGRNVSVAGLVTGRQRPGTASGVTFVTLEDEFGNLNVVVWRDLAERQRQALVGSR 983
            L A   GR V+VAGLV  RQRPG+A+GV F+T+EDE G  N++VW    ++ R+ ++GSR
Sbjct: 964  LAATATGRWVTVAGLVLVRQRPGSANGVIFMTIEDETGIANIIVWEKTFQKYRRQVMGSR 1023

Query: 984  LMKVDGRWEAVGEVRHLIAGRLTDLTPLLEGITVRSRDF 1022
            L+KV GR +    V H++A  L D+TP+L  +   +R F
Sbjct: 1024 LVKVRGRLQNQSGVIHVVADHLEDITPMLGLLRREARRF 1062