Pairwise Alignments

Query, 1023 a.a., DNA polymerase from Pseudomonas simiae WCS417

Subject, 1169 a.a., DNA polymerase III subunit alpha from Sinorhizobium meliloti 1021

 Score =  371 bits (952), Expect = e-106
 Identities = 315/1075 (29%), Positives = 488/1075 (45%), Gaps = 98/1075 (9%)

Query: 3    YAELHCLSNFSFQRGASSALELFERAKRQGYSALAITDECTLSGIVRAWQAAKAVELPLI 62
            +  L   S +S   GA    ++  +A      A+ I D   L   +   Q A    L  I
Sbjct: 23   FVHLRVHSAYSLLEGALPLKKIIGKAVADDQPAIGIADTNNLFAALEFSQKAADDGLQPI 82

Query: 63   IGSEVRIDNG-----------------PKLVLLVEDLSGYQHLCRLITLARRRAEK---- 101
            IG ++ ID                   P +VL+     GY  L  L++ A    E     
Sbjct: 83   IGCQLSIDMEDEAEGERRGHAHQFVKLPAIVLIAATEDGYARLVELVSRAYLEGEGHQQT 142

Query: 102  ----------GSYRLLREDFDQPLPGLLALWVAEDSDTQADSQWLRRTFGERLWLAVHLH 151
                      G+  L+        P  +AL     +  +A  + L   FG+RL++ +  H
Sbjct: 143  RISRSWLAAGGTTGLIALTGAGAGPVDMALKSGSPALAEARLKALIELFGDRLYVELQRH 202

Query: 152  CGQNDARHLEQRLQLAASLHLPAVACGDVHMHARGRRALQDTMTAIRHHVPVAEAGTRLH 211
             G  D RH  + + LA  L +P VA  +    +       D + A+ H+  V++  +R  
Sbjct: 203  -GNYDRRHENRMIDLAYRLDIPLVATNEAFFPSPSDYDAHDALMAVAHNAMVSD-DSRFR 260

Query: 212  PNGERHLRSLDALAALYPQ--PLLDETETIARRCTFDLSQLRYHYPH------ELVPAGH 263
               + +L+S   +AAL+      L+ T  +ARRC+F L       P       +   A  
Sbjct: 261  LTPDHYLKSRKEMAALFADLPEALENTIEVARRCSFMLKTRGPILPRFTGASDDPEEAER 320

Query: 264  NAQSWLRAVTEEGIAKRW------PQGVDAKTAQQINSELELISELGYESYFLTVHDIVQ 317
               + LR   EEG+ +R       P   +    +++  EL +I  + +  YFL V D ++
Sbjct: 321  AEVAELRRQAEEGLEERLAKLGMAPGYKEEDYRERLAFELGVIQRMKFPGYFLIVADFIK 380

Query: 318  FARSRSI-LCQGRGSAANSAVCYALGITEIDPSLTSMLFERFLSRERNEPPDIDVDFEHE 376
            +A+   I +  GRGS A S V YAL IT++DP   S+LFERFL+ ER   PD D+DF  +
Sbjct: 381  WAKQHDIPVGPGRGSGAGSLVAYALTITDVDPMRFSLLFERFLNPERVSMPDFDIDFCQD 440

Query: 377  RREEVLQYVFQRYGRTRAALTAVVSSYHASGAVRDVAKALGLPPDQINALADCCGRWSDA 436
            RREEV++YV Q+YGR + A      S  A  A+RDV + L +P  Q++ +          
Sbjct: 441  RREEVIRYVQQKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPAN 500

Query: 437  APPLD-------RLREGGFDPDSPILRRVLTLTQQLIGFPRHLSQHPGGFVISEYPLDTL 489
              PL        RLRE       P++ R+L + Q++ G  RH S H  G VI + PL  L
Sbjct: 501  PTPLSKAIEEEPRLREEA--EKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSQL 558

Query: 490  VPVENAAMAERTIIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDLLRRHRNRDLALATI 549
            VP+     ++  + Q++   ++  GL+K D L L  L+ ++   D + + R   + LA+I
Sbjct: 559  VPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAIDFVGK-RGIHIDLASI 617

Query: 550  PKEDPATYAMISKADTIGVFQIESRAQMSMLPRLKPQKFYDLVIEVAIVRPGPIQGGMVH 609
            P +DP TY  +S+ +T+GVFQ+ES      L  ++P    D++  VA+ RPGP++   + 
Sbjct: 618  PLDDPKTYETLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMEN--IP 675

Query: 610  PYLRRRNKEEETTYPSPELKVVLERTLGIPLFQEQVMQIAMVAADYGPGEADQLRRSMAA 669
             Y  R++ EEE     P++  +L+ T G+ ++QEQVMQIA V + Y  GEAD LRR+M  
Sbjct: 676  VYNARKHGEEEIESIHPKIDYLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGK 735

Query: 670  WKRHGGLEPHQERLRTGMLKNGYSEAFAAQIFEQIKGFGSYGFPESHAASFALLTYASCW 729
             K    ++  + R   G +KNG S+  A  IF+ +  F +YGF +SHAA++A+++Y + +
Sbjct: 736  -KIKAEMDKQRARFVDGAVKNGVSKPQADLIFDLLAKFANYGFNKSHAAAYAIVSYQTAY 794

Query: 730  LKCHEPAAFACALINSWPMGFYSPDQI---LQDARRHRLQIRPVDVQASDWDCSLEPIDG 786
            +K H P  F  A   S  +   + D+I    QDA R  +Q+    VQ S         + 
Sbjct: 795  MKAHYPVEFLAA---SMTLDMSNTDKINDFRQDAMRLGIQVVAPSVQTSH-----RHFET 846

Query: 787  AQPAIRMGLRMISGFREEDARRIEAARHRRAFSDIADL---DDRAGLDARAQALLADAGA 843
                I   L  + G  E     I A R  R F+ + D     D   L+ R    L  AGA
Sbjct: 847  GDNRIYYSLAALKGVGESAVDHIVAVRGDRPFASLEDFCLRIDPKLLNRRVFESLIAAGA 906

Query: 844  LRALAGNRHK------------ARWEVAGVHKQLGLFAGLPSPDEAVVELPSPT---VGE 888
                  +R +             R +   V  Q  +F    +     + LP  T     E
Sbjct: 907  FDCFGYDRAELIGGLDRILGFAQRAQENKVSGQSDMFGAGAATGPEKIALPPYTPWLASE 966

Query: 889  DLHADYATVGTTLGPHPLALLRAELRKRRCRSSQEL-MAVEHGRNVS-VAGLVTGRQRPG 946
             LH ++  +G  L  HPL      L K R ++  +   AV+ G     +AG VT +Q   
Sbjct: 967  KLHREFQVLGFYLSAHPLDTYNNLLAKMRVQTFADFSAAVKKGAAAGRLAGTVTSKQERK 1026

Query: 947  TASG--VTFVTLEDEFGNLNVVVWRDLAERQRQALV--GSRLMKVDG--RWEAVG 995
            T +G  +  V   D  G    V++ ++  + R  L    S +M VD   R E +G
Sbjct: 1027 TRTGNKMGIVAFSDASGQFEAVLFSEMLNQYRDLLEPGKSLVMTVDAEERPEGIG 1081