Pairwise Alignments

Query, 1023 a.a., DNA polymerase from Pseudomonas simiae WCS417

Subject, 1087 a.a., DnaE3 DNA polymerase III alpha chain from Sinorhizobium meliloti 1021

 Score =  912 bits (2358), Expect = 0.0
 Identities = 487/1037 (46%), Positives = 669/1037 (64%), Gaps = 16/1037 (1%)

Query: 1    MSYAELHCLSNFSFQRGASSALELFERAKRQGYSALAITDECTLSGIVRAWQAAKAVELP 60
            M YAEL   ++FSF R ASSA ELF  A+  G  AL + D  +L+GIVRA +A++A  L 
Sbjct: 1    MRYAELQVTTHFSFLRAASSAEELFATARLMGIEALGVVDRNSLAGIVRALEASRATGLR 60

Query: 61   LIIGSEVRIDNGPKLVLLVEDLSGYQHLCRLITLARRRAEKGSYRLLREDFDQPLPGLLA 120
            L++G  + + +G  +++   D + Y  L RL+TL + R  K +  +  +D      GL+ 
Sbjct: 61   LVVGCRLDLQDGMSILVYPTDRAAYSRLTRLLTLGKGRGGKANCIIHFDDVALYAEGLIG 120

Query: 121  LWVAEDSDTQADSQW--LRRTFGERLWLAVHLHCGQNDARHLEQRLQLAASLHLPAVACG 178
            + V + +D     Q   +   FG+R ++++ L    ND   L +   LA    +  +   
Sbjct: 121  ILVPDLADEVCAVQLRKIAEVFGDRAYVSLCLRRRPNDQLQLHELTNLAVKHRVKTIVTN 180

Query: 179  DVHMHARGRRALQDTMTAIRHHVPVAEAGTRLHPNGERHLRSLDALAALYPQ--PLLDET 236
            DV  H  GRR LQD +T IR  + + + G     + +R+L+  + +A L+P     L  T
Sbjct: 181  DVLFHEHGRRQLQDVVTCIRTGMTIDDVGFERERHADRYLKPPEEMARLFPAYPEALART 240

Query: 237  ETIARRCTFDLSQLRYHYPHELVPAGHNAQSWLRAVTEEGIAKRWPQGVDAKTAQQINSE 296
              I  RC F L +L Y YP E +  G  AQ  L+  T EG+  R+P+G+     + I  E
Sbjct: 241  MEIVERCRFSLEELVYQYPEEALILGMTAQQSLQHYTWEGVRARYPEGLPTHVEKTIRHE 300

Query: 297  LELISELGYESYFLTVHDIVQFARSRSILCQGRGSAANSAVCYALGITEIDPSLTSMLFE 356
            L LI  + Y  YFLTV  IV++ARS+ ILCQGRGSAANSAVCY LGIT IDP    +LFE
Sbjct: 301  LALIETMKYAPYFLTVFSIVRYARSQGILCQGRGSAANSAVCYVLGITSIDPETNDLLFE 360

Query: 357  RFLSRERNEPPDIDVDFEHERREEVLQYVFQRYGRTRAALTAVVSSYHASGAVRDVAKAL 416
            RF+S+ER+EPPDIDVDFEHERREEV+Q++++ YG  +AAL + V+ Y A GA+RDV KAL
Sbjct: 361  RFVSQERDEPPDIDVDFEHERREEVIQWIYKTYGHDKAALCSTVTRYRAKGAIRDVGKAL 420

Query: 417  GLPPDQINALADCCGRWSDAAPPLDRLREGGFDPDSPILRRVLTLTQQLIGFPRHLSQHP 476
             LP D I  L+     WS+      ++RE G +PD   L   L L QQL+G PR+LSQHP
Sbjct: 421  DLPEDLIRTLSSGIWSWSETVGER-QVRELGLNPDDRRLTLTLRLAQQLMGAPRNLSQHP 479

Query: 477  GGFVISEYPLDTLVPVENAAMAERTIIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDLL 536
            GGFV++   LD LVP+E A MA+R +I+WDKDD++A+  LKVD+LALGML+ + + F L+
Sbjct: 480  GGFVLTHDRLDDLVPIEPATMADRQVIEWDKDDIEALKFLKVDVLALGMLTCMAKAFALI 539

Query: 537  RRHRNRDLALATIPKEDPATYAMISKADTIGVFQIESRAQMSMLPRLKPQKFYDLVIEVA 596
              H++ D+ LATIP+EDPATYAMI KADT+G FQIESRAQMSMLPR+KP+ FYDLVI+VA
Sbjct: 540  SEHKHEDIDLATIPQEDPATYAMIRKADTLGTFQIESRAQMSMLPRMKPRTFYDLVIQVA 599

Query: 597  IVRPGPIQGGMVHPYLRRRNKEEETTYPSPELKVVLERTLGIPLFQEQVMQIAMVAADYG 656
            IVRPGPIQG MVHPYLRRR  +E+  YP+PEL+ VL +TLG+PLFQE  M++AMV A + 
Sbjct: 600  IVRPGPIQGDMVHPYLRRREGKEKVEYPTPELEAVLHKTLGVPLFQESAMRVAMVCAGFT 659

Query: 657  PGEADQLRRSMAAWKRHGGLEPHQERLRTGMLKNGYSEAFAAQIFEQIKGFGSYGFPESH 716
             GEADQLR+SMA +K  GG+   +++L  GM++NGY++ FA + F Q++GFGSYGFPESH
Sbjct: 660  GGEADQLRKSMATFKFTGGVSRFKDKLVNGMIRNGYTKEFAEKTFSQLEGFGSYGFPESH 719

Query: 717  AASFALLTYASCWLKCHEPAAFACALINSWPMGFYSPDQILQDARRHRLQIRPVDVQASD 776
            AASFAL+ YAS ++KC+ P  F  AL+NS PMGFY+P QI++DAR H +++RP+ +  S 
Sbjct: 720  AASFALIAYASNYIKCYFPDVFCAALLNSQPMGFYAPAQIVRDAREHGVEVRPICINRSR 779

Query: 777  WDCSLEPIDGA-QPAIRMGLRMISGFREEDARRIEAARHRRAFSDIADLDDRAGLDARAQ 835
            WDC LEPIDG+   A+R+G+R++ G    DA RI AAR    F+ + D+  R+G+   + 
Sbjct: 780  WDCMLEPIDGSGGHAVRLGMRLVRGLATADAARIVAARADEPFTSVDDMWRRSGVPVASL 839

Query: 836  ALLADAGA-LRALAGNRHKARWEVAGVHKQ-LGLFA--------GLPSPDEAVVELPSPT 885
              LA+A A L +L+  R  A W +  +  + L LF          +   +E  VEL   T
Sbjct: 840  VELAEADAFLPSLSLERRDALWAIKALRDEPLPLFTAAADREARAIAEQEEPEVELRQMT 899

Query: 886  VGEDLHADYATVGTTLGPHPLALLRAELRKRRCRSSQELMAVEHGRNVSVAGLVTGRQRP 945
             G+++  DY+  G TL  HPL  +R +L KRR  +  + M    G+ +  AGLV  RQRP
Sbjct: 900  DGQNVVEDYSHTGLTLREHPLRFMRDDLAKRRIVTCAQAMTAHDGQWLMAAGLVLVRQRP 959

Query: 946  GTASGVTFVTLEDEFGNLNVVVWRDLAERQRQALVGSRLMKVDGRWEAVGEVRHLIAGRL 1005
            G+A GV F+T+EDE G  N+VVW  L ER R+ ++G+ +M ++GR +  GEV HL+A +L
Sbjct: 960  GSAKGVMFITIEDETGIANIVVWPKLFERSRRVVLGASMMAINGRIQREGEVVHLVAQQL 1019

Query: 1006 TDLTPLLEGITVRSRDF 1022
             DL+  L  +  R   F
Sbjct: 1020 FDLSADLSSLAERDGAF 1036