Pairwise Alignments

Query, 1023 a.a., DNA polymerase from Pseudomonas simiae WCS417

Subject, 1170 a.a., DNA polymerase III, alpha subunit (NCBI) from Rhodospirillum rubrum S1H

 Score =  328 bits (840), Expect = 2e-93
 Identities = 297/1083 (27%), Positives = 476/1083 (43%), Gaps = 100/1083 (9%)

Query: 3    YAELHCLSNFSFQRGASSALELFERAKRQGYSALAITDECTLSGIVRAWQAAKAVELPLI 62
            +  L   +  S   GA     L +   + G  A+AITD   L G +     A  + +  I
Sbjct: 20   FVHLRVHTALSMSEGAIQVKALVKLCAKMGMPAVAITDSGNLFGALELSVTACDMGVQPI 79

Query: 63   IGSEVRIDNGP------------------KLVLLVEDLSGYQHLCRLIT----------- 93
            IG ++ + N                     +VLL ++ SGY +L ++++           
Sbjct: 80   IGCQIAVRNEEVRERGFGAGRDLRAPDPDAVVLLAKNASGYANLMKIVSRSFIEGDGSEA 139

Query: 94   ----LARRRAEKGSYRLLREDFDQPLPGLLALWVAEDSDTQADSQWLRRTFGERLWLAVH 149
                LA   A      LL      PL  LL        +  A     +  FG+R+++ + 
Sbjct: 140  PQVRLADIEALNDGLILLTGGVGGPLGRLLR--EGRRDEAAAILARHKEHFGDRVYVEIQ 197

Query: 150  LHCGQNDARHLEQRLQLAASLHLPAVACGDVHMHARGRRALQDTMTAIRHHVPVAEAGTR 209
             H   ++ R     + LA + ++  VA  + +   R      D +  ++    + +  TR
Sbjct: 198  RHGMADEDRIEADLIDLAYAQNVALVATNEPYYPDRAMFEAHDVLICMQQKTVIGDE-TR 256

Query: 210  LHPNGERHLRSLDALAALYPQ--PLLDETETIARRCTFDLSQLRYHYPHELVPAGHNAQS 267
                 E + +  + + AL+      +D T  IA+RC     + +   PH     G     
Sbjct: 257  RRLTPEHYFKPANEMRALFADLPEAVDNTLVIAKRCAVMSEKRKPILPHSPAVKGRTEAE 316

Query: 268  WLRAVTEEGIAKRWPQGVDAKTA-------------QQINSELELISELGYESYFLTVHD 314
             L A+ EEG+ KR  + V  +               +++  EL++I ++G+  YFL V D
Sbjct: 317  ALCAMAEEGLDKRLEKHVYREGMSEAERIEIAKPYRERLAYELDVIIKMGFPGYFLIVAD 376

Query: 315  IVQFARSRSI-LCQGRGSAANSAVCYALGITEIDPSLTSMLFERFLSRERNEPPDIDVDF 373
             +Q+A+   I +  GRGS A S V +AL IT++DP   S+LFERFL+ ER   PD D+DF
Sbjct: 377  FIQWAKDADIPVGPGRGSGAGSCVAWALTITDLDPLRFSLLFERFLNPERVSMPDFDIDF 436

Query: 374  EHERREEVLQYVFQRYGRTRAALTAVVSSYHASGAVRDVAKALGLPPDQINALADCCGRW 433
              +RREEV++YV + YG  R A         A   +R V + L +P   ++ +       
Sbjct: 437  CQDRREEVIRYVQREYGYERVAQIITFGKLQARAVLRSVGRVLQMPLGYVDKICKMVPNN 496

Query: 434  SDAAPPLDRLREG-----GFDPDSPILRRVLTLTQQLIGFPRHLSQHPGGFVISEYPLDT 488
              A   L    E          +  ++ R+L +  +L G   H S H  G VI + PLD 
Sbjct: 497  PAAPVTLKEAIEAEPQLRDLQKNDEMVARLLDIGMKLEGLYSHASTHAAGVVIGDRPLDN 556

Query: 489  LVPVENAAMAERTIIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDLLRRHRNRDLALAT 548
            LV +     ++  + Q++   ++  GL+K D L L  L+ ++     + + R   + L  
Sbjct: 557  LVALYRDPHSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQHAVRHIAK-RGITVDLLD 615

Query: 549  IPKEDPATYAMISKADTIGVFQIESRAQMSMLPRLKPQKFYDLVIEVAIVRPGPIQGGMV 608
            +P +D  +Y M+ + +T GVFQ+ES     +L  +KP    D+V  VA+ RPGP+    +
Sbjct: 616  LPLDDRRSYDMLGRGETSGVFQLESTGMRDVLRNMKPDTLEDIVAIVALYRPGPMDN--I 673

Query: 609  HPYLRRRNKEEETTYPSPELKVVLERTLGIPLFQEQVMQIAMVAADYGPGEADQLRRSMA 668
              Y++R+  EEE  Y    L+ +L+ T GI ++QEQVMQ A + A Y  G AD LRR+M 
Sbjct: 674  PSYIKRKKGEEEVVYLHDSLEPILKETYGILIYQEQVMQAAQIMAGYSLGGADLLRRAMG 733

Query: 669  AWKRHGGLEPHQERLRTGMLKNGYSEAFAAQIFEQIKGFGSYGFPESHAASFALLTYASC 728
              K    ++  +     G  K G SEA A+++F+QI  F  YGF +SHAA++ L+ Y + 
Sbjct: 734  K-KIKAEMDTQRALFVEGAGKRGTSEAKASEVFDQIAKFAGYGFNKSHAAAYGLVAYQTA 792

Query: 729  WLKCHEPAAFACALINSWPMGFYSPDQIL---QDARRHRLQIRPVDVQASDWDCSLEPID 785
            +LK + P  F  A +       ++ D++     + RR  + + P DV  S     +E  D
Sbjct: 793  YLKANYPVEFMAATMT---YDMHNTDKLAVFKGELRRLDIPLLPPDVNRSFAVFGVE--D 847

Query: 786  GAQPAIRMGLRMISGFREEDARRIEAARHRRA-FSDIADLDDRAG---LDARAQALLADA 841
            G   A+R  L  +          + A R  R  F D+AD   R     ++ R    L  A
Sbjct: 848  G---AVRYALGAVKNVGAAAMDALVAEREARGPFKDLADFARRLDGKVINKRLLENLIKA 904

Query: 842  GALRALAGNRHK--ARWEVAGVH----------KQLGLFAGLPSPDEAVVEL---PSPTV 886
            GAL +L G+R K  A  +V   H           Q  LF G  +  E  ++     + T+
Sbjct: 905  GALDSLDGDRAKLLANADVLMRHAQAAAEDRASNQSSLFGGAGATSEPPMKFRACAAWTI 964

Query: 887  GEDLHADYATVGTTLGPHPLALLRAELRKRRCRSSQELMAVEHGRNVSVAGLV----TGR 942
             E L  +   +G  L  HPL +    L +      + L     G       L       +
Sbjct: 965  TETLAHERDAMGFYLSAHPLDIYGDSLERLDVVPIEMLPGHLRGGGSGAVKLAVTPGARK 1024

Query: 943  QRPG-TASGVTFVTLEDEFGNLNVVVWRDLAERQRQALVGSR--LMKVDGRWEAVGEVRH 999
            +R G + S   FV L D  G+   +V+ ++    R+ L   R  L++ D R E  GE   
Sbjct: 1025 ERIGKSGSRYAFVELSDATGSCETMVFSEVLGASRELLDSGRPLLVRADARLE--GEEVR 1082

Query: 1000 LIA 1002
            L+A
Sbjct: 1083 LLA 1085