Pairwise Alignments

Query, 1023 a.a., DNA polymerase from Pseudomonas simiae WCS417

Subject, 1127 a.a., DNA polymerase III subunit alpha from Phaeobacter inhibens DSM 17395

 Score =  846 bits (2186), Expect = 0.0
 Identities = 481/1056 (45%), Positives = 650/1056 (61%), Gaps = 60/1056 (5%)

Query: 3    YAELHCLSNFSFQRGASSALELFERAKRQGYSALAITDECTLSGIVRAWQAAKAVELP-- 60
            YAEL   +NF+F  GAS   EL  RA   G SALAITD  +L+G+VRAW A K ++    
Sbjct: 28   YAELCVTTNFTFLTGASHPEELIVRAAELGLSALAITDHNSLAGVVRAWSALKELKRDPQ 87

Query: 61   --LIIGSEVRIDNG-------------------PKLVL---------------LVEDLSG 84
              L I S+ ++D+                    PKL++               L  D S 
Sbjct: 88   DALKIRSQHQVDSSSRQEIGHTSALPKPTTPIFPKLIVGCRLILQNCAVDWIALPCDRSA 147

Query: 85   YQHLCRLITLARRRAEKGSYRLLREDFDQPLPGLLALWVAED--SDTQADSQWLRRTFGE 142
            Y+ L RL+TL +RRAEKG   L  ED      G++ + + ++  S+  +D Q + R F  
Sbjct: 148  YKRLARLLTLGKRRAEKGQCLLYAEDMIDACKGMILIALPKETLSNAVSDIQKIGRQFPN 207

Query: 143  RLWLAVHLHCGQNDARHLEQRLQLAASLHLPAVACGDVHMHARGRRALQDTMTAIRHHVP 202
             ++L        +D  +L    +LA +   P VA GDV MH   RR L D +T +R ++ 
Sbjct: 208  HVFLGATPRYDGSDQAYLAACAKLAQTTCAPMVAVGDVLMHRANRRQLADVLTCMRENIN 267

Query: 203  VAEAGTRLHPNGERHLRSLDALAALYPQ--PLLDETETIARRCTFDLSQLRYHYPHELVP 260
            + + GTR  PN ER L++   +A ++      L  T  IA RC FDLS+L Y YPHE   
Sbjct: 268  IDDIGTRALPNAERRLKAGADMARIFRDHPAALRRTAEIANRCNFDLSELSYEYPHEEAE 327

Query: 261  AGHNAQSWLRAVTEEGIAKRWPQGVDAKTAQQINSELELISELGYESYFLTVHDIVQFAR 320
             G   Q  L  +  EG+ +R+P G   +  + +  EL  + +L + +YFLTVHDIVQFAR
Sbjct: 328  -GETPQDRLERLAREGLKRRYPDGPPDRAIKLMEKELSAVKDLEFPAYFLTVHDIVQFAR 386

Query: 321  SRSILCQGRGSAANSAVCYALGITEIDPSLTSMLFERFLSRERNEPPDIDVDFEHERREE 380
            S+ ILCQGRGSAANS +CY LGIT++ P + +M+FERF+S+ R EPPDIDVDFEHERREE
Sbjct: 387  SKGILCQGRGSAANSILCYLLGITDVSPDMIAMVFERFVSKHRGEPPDIDVDFEHERREE 446

Query: 381  VLQYVFQRYGRTRAALTAVVSSYHASGAVRDVAKALGLPPDQINALADCCGRWSDAAPPL 440
            V+Q+++Q+YGR RA L A V  +    A+R+V K +GL  D    L+      S+ +  L
Sbjct: 447  VIQWIYQKYGRHRAGLCATVIHFRTRAAIREVGKVMGLSQDVTAGLSGQIWGMSNGSVDL 506

Query: 441  DRLREGGFDPDSPILRRVLTLTQQLIGFPRHLSQHPGGFVISEYPLDTLVPVENAAMAER 500
            +R+RE G + +   L + + L  ++IGFPRHLSQH GGFVI+   LD L P+ENAAM  R
Sbjct: 507  ERIRELGLNLEDRRLMQTIRLIGEIIGFPRHLSQHVGGFVITSGRLDELAPIENAAMENR 566

Query: 501  TIIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDLLRRHRNRDLALATIPKEDPATYAMI 560
            T+I WDKDD+DA+ +LKVDILALGML+ IR+ F L+++H N   ++ATIP++D ATY M+
Sbjct: 567  TVICWDKDDIDALRILKVDILALGMLTCIRKAFALMQQHENITHSIATIPQKDEATYDML 626

Query: 561  SKADTIGVFQIESRAQMSMLPRLKPQKFYDLVIEVAIVRPGPIQGGMVHPYLRRRNKEEE 620
              AD +GVFQ+ESRAQM+ LPR++P++FYDLVIEVAIVRPGPIQG MV PY+RRRN  E+
Sbjct: 627  CAADAVGVFQVESRAQMNFLPRMRPREFYDLVIEVAIVRPGPIQGDMVRPYIRRRNGLEK 686

Query: 621  TTYPSPELKVVLERTLGIPLFQEQVMQIAMVAADYGPGEADQLRRSMAAWKRHGGLEPHQ 680
                 P+L+ V  RT G+PLFQEQ +QIA+V A +   EAD LRRS+A+++R G +  ++
Sbjct: 687  PDPFGPQLEQVTRRTKGVPLFQEQALQIAVVGAGFSAEEADHLRRSLASFRRMGTISKYR 746

Query: 681  ERLRTGMLKNGYSEAFAAQIFEQIKGFGSYGFPESHAASFALLTYASCWLKCHEPAAFAC 740
            ++   GMLKN YS   A + F QI+GF  YGFPESHAA+FA+L Y S WLKCH PA FAC
Sbjct: 747  DKFIAGMLKNKYSREIAERCFGQIEGFADYGFPESHAAAFAMLAYVSAWLKCHHPAIFAC 806

Query: 741  ALINSWPMGFYSPDQILQDARRHRLQIRPVDVQASDWDCSLEPIDGAQPAIRMGLRMISG 800
            AL+NS PMGFY+P QI++D R H +++RP+ V  S WD SLE       A+R+G R I G
Sbjct: 807  ALLNSQPMGFYAPAQIVRDVRDHGIEVRPICVNQSQWDNSLERRPDGTLALRLGFRQIKG 866

Query: 801  FREEDARRIEAARHRRAFSDIADLDDRAGLDARAQALLADAGALRALAGNRHKARWEVAG 860
            F+E+D   I AAR    + D   L  RAGL   A   LA+A A  ++  +R  A W+V  
Sbjct: 867  FKEDDTGWIIAAR-GNGYIDPEHLWLRAGLAPAALERLAEADAFSSMGISRRDALWQV-- 923

Query: 861  VHKQLGLFAGLP---------SPDEAVVELPSPTVGEDLHADYATVGTTLGPHPLALLRA 911
              K +   A LP         + +E  V LP   +GE++  DY ++  +L  HP+ LLR 
Sbjct: 924  --KSITTPAPLPLFNDQLDGEAINEPNVMLPRMHLGEEVVEDYVSMRLSLRAHPMELLRP 981

Query: 912  ELRKRRCRSSQELMAVEHGRNVSVAGLVTGRQRPGTASGVTFVTLEDEFGNLNVVVWRDL 971
             L    C  + +L+     R VSV GLV  RQRPGTASGV F+TLEDE G  NVVVW+ +
Sbjct: 982  TLPGLTC--NDQLIKAPLQR-VSVGGLVITRQRPGTASGVIFLTLEDETGVCNVVVWKKI 1038

Query: 972  AERQRQALVGSRLMKVDGRWEAVGEVRHLIAGRLTD 1007
             ER R+ ++G RL+ V G  +  G + H+IA  + D
Sbjct: 1039 YERFRRIVMGGRLLCVTGYLQREGTIVHVIAQHIED 1074