Pairwise Alignments

Query, 1023 a.a., DNA polymerase from Pseudomonas simiae WCS417

Subject, 1078 a.a., DNA polymerase III, alpha subunit (RefSeq) from Shewanella loihica PV-4

 Score =  920 bits (2377), Expect = 0.0
 Identities = 519/1080 (48%), Positives = 666/1080 (61%), Gaps = 65/1080 (6%)

Query: 1    MSYAELHCLSNFSFQRGASSALELFERAKRQGYSALAITDECTLSGIVRAWQAAKAVELP 60
            + YAELH LSN+SF RGAS   EL E+AKR GY ALA+TDEC+ +G+V+A +AAK  +L 
Sbjct: 5    LQYAELHVLSNYSFLRGASHPHELVEQAKRLGYQALALTDECSFAGVVKAHEAAKRCDLK 64

Query: 61   LIIGSEVRIDNGPKLVLLVEDLSGYQHLCRLITLARRRAEKGSYRLLREDFDQPLPGLLA 120
            LI+G+E  +D G   VLL      Y  +  LIT ARR   KG YR+  E        LL 
Sbjct: 65   LILGAEFHLDEG-LFVLLAPCRFAYGEISALITNARRSQGKGEYRVSLEAILAQQQSLL- 122

Query: 121  LW------------------------------------------VAEDSDTQADSQWLRR 138
            LW                                           A+ S  Q+D   L  
Sbjct: 123  LWRPPSLAQFRQAGEARRDEARSDDARSDLAVNDTAESEMAGGDTAKGSAAQSDEPNLLS 182

Query: 139  TFGE---------------RLWLAVHLHCGQNDARHLEQRLQLAASLHLPAVACGDVHMH 183
             + +               RL L +       +A +L+Q   L+ +  +P VA G V MH
Sbjct: 183  RYRDHIASIASRLVVAFPDRLHLLMERLLLPGEALNLQQWQWLSQTQKVPCVAAGGVRMH 242

Query: 184  ARGRRALQDTMTAIRHHVPVAEAGTRLHPNGERHLRSLDALAALYPQPLLDETETIARRC 243
               R+ L D +T I H   +         N E  L+ + A    YPQ  +D    +ARRC
Sbjct: 243  EAERQPLLDILTCIAHGRDLDSGVALCSINAEASLKPIAAQRKRYPQEWIDNGLALARRC 302

Query: 244  TFDLSQLRYHYPHELVPAGHNAQSWLRAVTEEGIAKRWPQGVDAKTAQQINSELELISEL 303
             F L +L+Y YP E+VPAG  A  +L     EG  +R+P GV  +   Q   ELELI+ +
Sbjct: 303  HFSLDELKYEYPAEVVPAGMQASDYLAQAVREGARRRFPDGVPDRVKAQYEKELELIAAM 362

Query: 304  GYESYFLTVHDIVQFARSRSILCQGRGSAANSAVCYALGITEIDPSLTSMLFERFLSRER 363
             YE +FLT++DIV FA+S+ IL QGRGSAANS VCY LGITE+DP+  +MLFERF+S+ER
Sbjct: 363  AYEYFFLTIYDIVCFAKSQQILYQGRGSAANSVVCYCLGITEVDPTKINMLFERFISKER 422

Query: 364  NEPPDIDVDFEHERREEVLQYVFQRYGRTRAALTAVVSSYHASGAVRDVAKALGLPPDQI 423
            NEPPDIDVDFEHERREEV+QY++++YGR R AL A V  Y    A+ DV KALG+  +Q+
Sbjct: 423  NEPPDIDVDFEHERREEVIQYIYRKYGRDRTALAAAVICYRFKSAMGDVGKALGIDAEQV 482

Query: 424  NALADCCGRWSDAAPPLDRLREGGFDPDSPILRRVLTLTQQLIGFPRHLSQHPGGFVISE 483
              +     R         +L      P++   R +L L Q LIGFPRHLSQH GGF+IS 
Sbjct: 483  ALMIKNIDRRDPKHHWTTQL--AAMLPEAGRGRMLLPLVQTLIGFPRHLSQHVGGFIISA 540

Query: 484  YPLDTLVPVENAAMAERTIIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDLLRRHRNRD 543
             PL  LVP+ENAAMA+RT+IQWDKDDL+++GLLKVDILALGML+AIR+ F LL     + 
Sbjct: 541  GPLSELVPIENAAMADRTVIQWDKDDLESLGLLKVDILALGMLTAIRKTFTLLSL-PEKA 599

Query: 544  LALATIPKEDPATYAMISKADTIGVFQIESRAQMSMLPRLKPQKFYDLVIEVAIVRPGPI 603
             ++A +  E+   Y M+   D+IGVFQ+ESRAQ +MLPRLKP  +YDLV+++AIVRPGPI
Sbjct: 600  FSMADVAWEEAEVYRMLQAGDSIGVFQVESRAQSAMLPRLKPACYYDLVVQIAIVRPGPI 659

Query: 604  QGGMVHPYLRRRNKEEETTYPSPELKVVLERTLGIPLFQEQVMQIAMVAADYGPGEADQL 663
            QG MVHPYLRRR+  E   YPSP ++ VL RT+G+P+FQEQV+Q+AMVAA +  GEADQL
Sbjct: 660  QGDMVHPYLRRRDGLEAVEYPSPAVESVLSRTMGVPIFQEQVIQLAMVAAGFSGGEADQL 719

Query: 664  RRSMAAWKRHGGLEPHQERLRTGMLKNGYSEAFAAQIFEQIKGFGSYGFPESHAASFALL 723
            RR+MA+WKR G LE  + +L  GM   GYS+ FA QI+ QIKGFG YGFPESH+ASFALL
Sbjct: 720  RRAMASWKRTGELEKFEAKLLQGMAARGYSQTFAEQIYRQIKGFGEYGFPESHSASFALL 779

Query: 724  TYASCWLKCHEPAAFACALINSWPMGFYSPDQILQDARRHRLQIRPVDVQASDWDCSLEP 783
             Y S +LK H PAAF CAL+NS PMGFYSP Q++QD +RH + + PV V  SDWD SL P
Sbjct: 780  AYVSAYLKHHYPAAFCCALLNSQPMGFYSPSQLIQDVQRHDVMVLPVCVNHSDWDNSLVP 839

Query: 784  -IDGAQPAIRMGLRMISGFREEDARRIEAARHRRAFSDIADLDDRAGLDARAQALLADAG 842
             ++  QPAIR+G R + G R E+ + + AAR    F+ +  L +  GL      LLA A 
Sbjct: 840  LLEAEQPAIRLGFRQVKGLRLEEIKTLIAARPEGGFTRVEQLYE-LGLSQGCLTLLASAD 898

Query: 843  ALRALAGNRHKARWEVAGVHKQLGLFAGLPSPDEAVVELPSPTVGEDLHADYATVGTTLG 902
            AL  LAG+R++ARW+++     L LF  LP+    VV  P P+    + +DY  +G +LG
Sbjct: 899  ALLTLAGHRYQARWQLSAYQPSLPLFDDLPAVASEVVLAP-PSEMAAMQSDYRHLGLSLG 957

Query: 903  PHPLALLRAELRKRRCRSSQELMAVEHGRNVSVAGLVTGRQRPGTASGVTFVTLEDEFGN 962
             H +A LR       CR + EL    HG+ V VAG+V GRQRPGTASGVTFVTLEDE GN
Sbjct: 958  RHVMAQLRGLAPFVGCRHASELADCRHGQLVHVAGVVVGRQRPGTASGVTFVTLEDETGN 1017

Query: 963  LNVVVWRDLAERQRQALVGSRLMKVDGRWEAVGEVRHLIAGRLTDLTPLLEGITVRSRDF 1022
            +NV+VW   A  QRQ  + S+++KV G  E    V H+IAGRL DL+ L+    + SRDF
Sbjct: 1018 INVIVWSATARAQRQPFLTSKILKVTGVLETQSGVSHVIAGRLEDLSTLVNDFELSSRDF 1077