Pairwise Alignments

Query, 1023 a.a., DNA polymerase from Pseudomonas simiae WCS417

Subject, 1083 a.a., DNA polymerase III alpha subunit DnaE2 from Caulobacter crescentus NA1000

 Score =  852 bits (2202), Expect = 0.0
 Identities = 493/1087 (45%), Positives = 640/1087 (58%), Gaps = 75/1087 (6%)

Query: 3    YAELHCLSNFSFQRGASSALELFERAKRQGYSALAITDECTLSGIVRAWQAAKAVELPLI 62
            YAEL   +NFSF RGAS A EL   A+  G +A+ I D  +L+G+VRAW AAK   + ++
Sbjct: 6    YAELQATTNFSFLRGASHAEELALTAEALGLTAIGIVDRNSLAGVVRAWTAAKRRSIRVL 65

Query: 63   IGSEVR-IDNGPKLVLLVEDLSGYQHLCRLITLARRRAEKGSYRLLREDFDQPLPGLLAL 121
             G  +  +D  P L+    D   +  L RL+T+ + RAEKG   L   DF     G L L
Sbjct: 66   TGCRLDFMDGAPSLLCYPTDREAFGRLTRLLTIGQLRAEKGECHLTWRDFLDHSEGQLGL 125

Query: 122  WVAEDSDTQADSQWLRRTFGE---RLWLAVHLHCGQNDARHLEQRLQLAASLHLPAVACG 178
             V       +  Q L R  G+   R WLA        D + L +   L  +   P VA  
Sbjct: 126  IVPPRVLDDSFEQHLTRMAGDLRGRSWLAASRAYAARDLQRLARLESLGRTSGAPIVATN 185

Query: 179  DVHMHARGRRALQDTMTAIRHHVPVAEAGTRLHPNGERHLRSLDALAALYPQ--PLLDET 236
            DV  H   RR LQD ++ +R H  + EAG RL  N ERH++S + +A L+ +    ++ T
Sbjct: 186  DVLYHGPERRPLQDVISCVREHCAIQEAGFRLEANAERHIKSPEEMARLFDRWPRAVERT 245

Query: 237  ETIARRCTFDLSQLRYHYPHELVPAGHNAQSWLRAVTEEGIAKRWPQGVDAKTAQQINSE 296
              I  R  FDL  +R  YP E VP G  A   L  +T +G A R+P GV  K   QI  E
Sbjct: 246  VEIVERIGFDLKDIREQYPDEPVPPGKTAMQHLTDLTWKGAAWRYPNGVSPKVTAQIQEE 305

Query: 297  LELISELGYESYFLTVHDIVQFARSRSILCQGRGSAANSAVCYALGITEIDPSLTSMLFE 356
            L LI ++ Y +YF+TVHDIV+ ARS  ILCQGRGSAANS+VC+ LG+T IDP+   +LF 
Sbjct: 306  LRLIEKMDYPNYFITVHDIVREARSMGILCQGRGSAANSSVCFCLGVTAIDPTEHRLLFT 365

Query: 357  RFLSRERNEPPDIDVDFEHERREEVLQYVFQRYGRTRAALTAVVSSYHASGAVRDVAKAL 416
            RF+S  R EPPDIDVDFEH+RREEV+QYVFQRYGR  AA+   V  Y    A+RDV KAL
Sbjct: 366  RFISENRGEPPDIDVDFEHDRREEVMQYVFQRYGRAYAAICGTVIHYRPRSAIRDVGKAL 425

Query: 417  GLPPDQINALADCC-GRWSDAAPPLDRLREGGFDPDSPILRRVLTLTQQLIGFPRHLSQH 475
            GL  D  + LA    G W D  P  D LR  G DP +P + R + L   LIGFPRHLSQH
Sbjct: 426  GLTEDVTSLLAGTVWGSWGDGLPE-DHLRNAGLDPKAPEIARAVGLANDLIGFPRHLSQH 484

Query: 476  PGGFVISEYPLDTLVPVENAAMAERTIIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDL 535
             GGFV+++  LD  VP+  AAM +RT I+WDKDD+D++GL+KVDILALGML AI+R   +
Sbjct: 485  VGGFVLTKRRLDETVPIGKAAMKDRTFIEWDKDDIDSLGLMKVDILALGMLHAIQRAMTM 544

Query: 536  LRRHRNRDLA--LATIPKEDPATYAMISKADTIGVFQIESRAQMSMLPRLKPQKFYDLVI 593
            LR    +D    LA IPKE P  Y M+  AD++GVFQ+ESRAQMSMLPRL+P++FYDLVI
Sbjct: 545  LREDHGQDWLKDLADIPKEVPGVYDMLCAADSVGVFQVESRAQMSMLPRLRPREFYDLVI 604

Query: 594  EVAIVRPGPIQGGMVHPYLRRRNKEEETTYPSP--------ELKVVLERTLGIPLFQEQV 645
            +VAIVRPGPIQG MVHPYL+RRNKEE   +P P        EL+ +L +T G+PLFQEQ 
Sbjct: 605  QVAIVRPGPIQGDMVHPYLKRRNKEEPVDWPKPSPEHGPPDELQEILGKTFGVPLFQEQA 664

Query: 646  MQIAMVAADYGPGEADQLRRSMAAWKRHGGLEPHQERLRTGMLKNGYSEAFAAQIFEQIK 705
            M +A+ AA + P EAD LR++MA ++  G  + ++ +   GM+  GY  AFA + F+QI+
Sbjct: 665  MSLAIEAAKFTPDEADGLRKAMATFRNLGSPDAYRNKFIEGMVGRGYERAFAERCFKQIE 724

Query: 706  GFGSYGFPESHAASFALLTYASCWLKCHEPAAFACALINSWPMGFYSPDQILQDARRHRL 765
            GF  YGFPESHAASFA L Y S W+K   P  F  ALIN+ PMGFY P Q+++DAR H +
Sbjct: 725  GFSHYGFPESHAASFAKLVYVSAWIKWAWPDVFCAALINAQPMGFYQPAQLVRDAREHGV 784

Query: 766  QIRPVDVQASDWDCSLEPID-GAQP------------------AIRMGLRMISGFREE-- 804
            ++ P D+  SDWDC+L PI  G +P                  A+R+G R I G RE   
Sbjct: 785  EVLPPDILTSDWDCTLAPISTGFRPPRVRHDKVACQETRPRWKAVRLGFRQIKGLRETLD 844

Query: 805  ----DARRIEAARHRRAFSDIADLDDRAGLDARAQALLADAGALRALAGNRHKARWEVAG 860
                   R E AR    F+       + G+  +A  LLA+A A  ++  +R +A W V G
Sbjct: 845  IPPLLKARGEGARTPAEFA-------QGGVPQKALELLAEADAFASVGLSRREALWAVKG 897

Query: 861  V---HK---QLGLFAGLPSPDEAVVELPSPTVGEDLHADYATVGTTLGPHPLALLRAELR 914
            +   HK   Q  L AGLP  +E V  LP+    +++  DY T   +L  HP+   R+ L 
Sbjct: 898  LKGEHKAPVQAPLLAGLPLFEERVA-LPAMAATQEVAEDYRTTSLSLKAHPIGFYRSMLA 956

Query: 915  KRRCRSSQELMAVEHGRNVSVAGLVTGRQRPGTASGVTFVTLEDEFGNLNVVVWRDLAER 974
             R    ++ L++++ G  VSVAGLV  RQRPGTA GV FVTLEDE G  N VVW+D  + 
Sbjct: 957  ARGVVPAERLLSLKDGARVSVAGLVLIRQRPGTAKGVVFVTLEDETGVANAVVWKDRFDA 1016

Query: 975  QRQALVGSRLMKVDGRWEAVGEVRHLIAGRLTDLTPLL------------------EGIT 1016
             R  ++ +  + V GR +    V H++A R TDL+  L                   G  
Sbjct: 1017 ARNVVMTASFLIVHGRVQRADNVIHVVAERFTDLSAELSSLRDEPGAPAPRIRQKVSGRL 1076

Query: 1017 VRSRDFH 1023
            +RSRDFH
Sbjct: 1077 LRSRDFH 1083