Pairwise Alignments

Query, 838 a.a., excinuclease ABC subunit A from Pseudomonas simiae WCS417

Subject, 941 a.a., excinuclease ABC, A subunit (RefSeq) from Shewanella loihica PV-4

 Score =  498 bits (1283), Expect = e-145
 Identities = 275/700 (39%), Positives = 404/700 (57%), Gaps = 32/700 (4%)

Query: 144 FSPNLPQGACPQCHGLGRVYEVTEALMVPDPSLTIRQRAVASWPLA--WQGQNQRDILVT 201
           FS N P GACP C GLG         ++ +  L++   A+  W     +  Q    +   
Sbjct: 267 FSFNNPAGACPTCDGLGVQQFFDADRVITNTELSLAGGAIRGWDRRNFYYFQMLTSLAEH 326

Query: 202 LGYDVDIPWRDLPKKQRDWILFTEETPTVPVYAGFTPEQTRDALKRKLEPSYQGTFMGAR 261
             +DV+ P+  L  K R+ +L      ++     F     R  +  +  P     F G  
Sbjct: 327 YKFDVEAPFEKLSAKIRNIVLHGSGKESI----AFKYINDRGDVVVRNHP-----FEGIL 377

Query: 262 RYILHTFAHTQSALMKKRVSQFMQGSACPLCEGKRLTKAALSVKFAGVDIGELSQLSLAQ 321
             +   +  T+S  +++ +++++   AC  C G RL + A  V    +++  L+  S+ +
Sbjct: 378 NNMDRRYRETESNAVREELAKYINTQACSSCGGSRLREEARHVFIEDLNLPRLTDWSIGE 437

Query: 322 LAELLRPVAAGQDTMKLSVEKRLAAQRIAQDLLERVSTLTELGLGYLSLERSTPTLSSGE 381
             E         + + L+ ++   A++I +++ +R+  L  +GL YLSL RS  TLS GE
Sbjct: 438 AMEYF-------EQLSLTGQRAQIAEKILKEVRDRLGFLVNVGLNYLSLSRSADTLSGGE 490

Query: 382 LQRLRLATQLGSQLFGVIYVLDEPSAGLHPADGEALFTALDRLKAAGNSLFVVEHDLETM 441
            QR+RLA+Q+G+ L GV+YVLDEPS GLH  D E L   L  L+  GN++ VVEHD + +
Sbjct: 491 AQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLIHLRDLGNTVIVVEHDEDAI 550

Query: 442 RRADWLIDVGPAAGEHGGQVLYSGPPAGLAQVQASQTRAYLFAEKRVSKQERR---DPTG 498
           R AD +ID+GP AG HGGQV+  GP   +     S T  Y+  +K++   E+R   D + 
Sbjct: 551 RMADHIIDIGPGAGVHGGQVICDGPLKEIVACDESVTGQYISGKKQIHISEKRAQYDASK 610

Query: 499 WLTLQGVTRNNLKDLNVDFPLGCFTAVTGISGSGKSSLVSQALLELVSAGLGRVVENDEE 558
            + L G + NNLK +++  P+G FT VTG+SGSGKS+L++    ++    L     ++  
Sbjct: 611 VIELFGASGNNLKQVDLTIPVGLFTCVTGVSGSGKSTLINDTFYKIAHRQLNGATVDEPA 670

Query: 559 PSLEDDAPQTSGGHIHAGLEHIRRLVQVDQKPIGRTPRSNLATYTGLFDNVRKLFAATPA 618
           P  +            AG++H  ++V +DQ PIGRTPRSN ATYTG+F  +R+LFAAT  
Sbjct: 671 PYKKV-----------AGMDHCDKVVDIDQSPIGRTPRSNPATYTGIFTPIRELFAATQE 719

Query: 619 AKKRHYDAGQFSFNVAKGRCPNCEGEGFVSVELLFMPSVYAPCPTCHGARYNPETLAVKW 678
           A+ R Y  G+FSFNV  GRC  C+G+G + VE+ F+P VY PC +C   RYN ETL V++
Sbjct: 720 ARTRGYKPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDSCKSKRYNRETLEVRY 779

Query: 679 QGLTIAQVLGLTVEQAVEVFAEQPSVLRSLQVLRDIGLGYLRLGQPATELSGGEAQRIKL 738
           +G  I +VL +TVE+A E F   P++ R LQ L ++GL Y+ LGQ AT LSGGEAQR+KL
Sbjct: 780 KGKNIHEVLEMTVEEAREFFDAVPAIARKLQTLMEVGLSYIGLGQSATTLSGGEAQRVKL 839

Query: 739 ATELQRNARGATLYVLDEPTTGLHPRDVDRLLSQLNHLVEAGHTVVVVEHEMRVVAQSDW 798
           A EL +   G TLY+LDEPTTGLH  D+  LL  L+ L   G+T+VV+EH + V+  +DW
Sbjct: 840 AKELSKRDTGKTLYILDEPTTGLHFADIQLLLDVLHRLKAHGNTIVVIEHNLDVIKTADW 899

Query: 799 VIDIGPGAGDLGGAVVASGTPQKVAKSKKSRTAAFLAKAL 838
           ++D+GP  G  GG ++ SGTP++VA+   S TA FL   L
Sbjct: 900 IVDLGPEGGSGGGTILVSGTPEQVAEHPSSHTARFLKPLL 939



 Score =  131 bits (330), Expect = 2e-34
 Identities = 60/113 (53%), Positives = 88/113 (77%)

Query: 18  VRVRGAREHNLRNVDVDIPRDALVVFTGVSGSGKSSLAFSTVYAEAQRRYFESVAPYARR 77
           + VRGAR HNL+N+++ IPRD L+V TG+SGSGKSSLAF T+YAE QRRY ES++ YAR+
Sbjct: 4   IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63

Query: 78  LIDQVGVPDVDSIEGLPPAVALQQQRGTPSARSSVGSVTTLSSLIRMLYSRAG 130
            +  +  PDVD IEGL PA++++Q+  + + RS+VG++T +   +R+L++R G
Sbjct: 64  FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVG 116



 Score = 57.0 bits (136), Expect = 5e-12
 Identities = 41/118 (34%), Positives = 60/118 (50%), Gaps = 11/118 (9%)

Query: 500 LTLQGVTRNNLKDLNVDFPLGCFTAVTGISGSGKSSLVSQALLELVSAGLGRVVENDEEP 559
           + ++G   +NLK++N+  P      +TG+SGSGKSSL   A   L + G  R VE     
Sbjct: 4   IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSL---AFDTLYAEGQRRYVE----- 55

Query: 560 SLEDDAPQTSGGHIHAGLEHIRRL---VQVDQKPIGRTPRSNLATYTGLFDNVRKLFA 614
           SL   A Q         ++HI  L   + ++QK     PRS + T T ++D +R LFA
Sbjct: 56  SLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFA 113



 Score = 55.5 bits (132), Expect = 1e-11
 Identities = 52/194 (26%), Positives = 84/194 (43%), Gaps = 29/194 (14%)

Query: 18  VRVRGAREHNLRNVDVDIPRDALVVFTGVSGSGKSSLAFSTVYAEAQRRY----FESVAP 73
           + + GA  +NL+ VD+ IP       TGVSGSGKS+L   T Y  A R+      +  AP
Sbjct: 612 IELFGASGNNLKQVDLTIPVGLFTCVTGVSGSGKSTLINDTFYKIAHRQLNGATVDEPAP 671

Query: 74  YARRLIDQVGVPDVDSIEGLPPAVALQQQRGTPSARSSVGSVTTLSSLIRMLY-----SR 128
           Y +          V  ++     V + Q     + RS+  + T + + IR L+     +R
Sbjct: 672 YKK----------VAGMDHCDKVVDIDQSPIGRTPRSNPATYTGIFTPIRELFAATQEAR 721

Query: 129 AGSYPPGQPMLYAEDFSPNLPQGACPQCHGLGRV---YEVTEALMVPDPSLTIRQRAVAS 185
              Y PG+       FS N+  G C  C G G +         + VP  S   ++    +
Sbjct: 722 TRGYKPGR-------FSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDSCKSKRYNRET 774

Query: 186 WPLAWQGQNQRDIL 199
             + ++G+N  ++L
Sbjct: 775 LEVRYKGKNIHEVL 788