Pairwise Alignments

Query, 838 a.a., excinuclease ABC subunit A from Pseudomonas simiae WCS417

Subject, 951 a.a., excinuclease ABC subunit UvrA from Methanococcus maripaludis S2

 Score =  519 bits (1336), Expect = e-151
 Identities = 290/705 (41%), Positives = 423/705 (60%), Gaps = 32/705 (4%)

Query: 144 FSPNLPQGACPQCHGLGRVYEVTEALMVPDPSLTIRQRAVASWPLAWQGQNQRDILVT-- 201
           FS N P GAC  C GLG   E    L++PD +  I   AVA +     G   + +     
Sbjct: 266 FSFNSPFGACEYCSGLGIKMEFDADLIIPDKNKCIADGAVALYRNFLDGYRSQHLAAVAN 325

Query: 202 -LGYDVDIPWRDLPKKQRDWILFTEETPTVPVYAGFTPEQTRDALKR---KLEPSYQGTF 257
             G+ V  P +DL K+Q D +++             +PE+    +       E S    +
Sbjct: 326 HFGFTVLTPIKDLSKEQLDILMYG------------SPEKIHFKVSNGSGDTEWSQNKPW 373

Query: 258 MGARRYILHTFAHTQSALMKKRVSQFMQGSACPLCEGKRLTKAALSVKFAGVDIGELSQL 317
            G     +  +  T+S   +K + +FM+ S CP C GKRL   AL+VK     I +L+ L
Sbjct: 374 EGLIPQSIRLYNETKSEYRRKELEKFMKVSLCPKCGGKRLKDKALAVKIEDKSIIDLTDL 433

Query: 318 SLAQLAELLRPVAAGQDTMKLSVEKRLAAQRIAQDLLERVSTLTELGLGYLSLERSTPTL 377
           S+++  E         + +KL+ ++   A+++ +++  R+  L ++GLGYL+L R + TL
Sbjct: 434 SISKAEEFF-------NNLKLTDKEYEIAKQVIKEIKSRLKFLNDVGLGYLTLSRRSGTL 486

Query: 378 SSGELQRLRLATQLGSQLFGVIYVLDEPSAGLHPADGEALFTALDRLKAAGNSLFVVEHD 437
           S GE QR+RLATQ+GS L GV+YVLDEPS GLH  D + L   L +L+   N+L VVEHD
Sbjct: 487 SGGEAQRIRLATQIGSNLTGVLYVLDEPSIGLHQRDNQKLIETLHKLRNLDNTLVVVEHD 546

Query: 438 LETMRRADWLIDVGPAAGEHGGQVLYSGPPAGLAQVQASQTRAYLFAEKRVS-KQERRDP 496
            +T+  AD+++D+GP AG HGG V+  G P  +++ + S T  YL  E ++   + RR  
Sbjct: 547 EDTILNADYVVDMGPGAGVHGGDVVAVGTPMEISKNKDSLTGKYLSGELKIEIPKNRRKS 606

Query: 497 TGWLTLQGVTRNNLKDLNVDFPLGCFTAVTGISGSGKSSLVSQALLELVSAGLGR---VV 553
             +L L    +NNLKD++V+ P G F  +TG+SGSGKS+L+ + L   +   +     V 
Sbjct: 607 DKFLKLSNCRQNNLKDVSVEIPTGVFNVITGVSGSGKSTLIYENLYPALKEKIKSDESVG 666

Query: 554 ENDEEPSLEDDAPQTSGGHIHAGLEHIRRLVQVDQKPIGRTPRSNLATYTGLFDNVRKLF 613
           E D E  L ++  +     I++ ++   ++V +DQ PIGRTPRSN ATYT +FD +R++F
Sbjct: 667 ELDFEDQLYENTKEKCNLEINSEID---KVVVIDQSPIGRTPRSNPATYTKVFDKIRQVF 723

Query: 614 AATPAAKKRHYDAGQFSFNVAKGRCPNCEGEGFVSVELLFMPSVYAPCPTCHGARYNPET 673
           A T  AK + Y  G+FSFNV  GRC NC+G+G + +E+ F+P V+  C  C GARYN ET
Sbjct: 724 AETKEAKIKGYGPGRFSFNVKGGRCENCQGDGVIKIEMNFLPDVFVECEECKGARYNHET 783

Query: 674 LAVKWQGLTIAQVLGLTVEQAVEVFAEQPSVLRSLQVLRDIGLGYLRLGQPATELSGGEA 733
           L VK++G +I+ VL ++VE+A E F   P +   L+ L D+GLGY++LGQ +T LSGGEA
Sbjct: 784 LEVKYKGKSISDVLNMSVEEAREHFKNIPQISNKLKTLCDVGLGYIKLGQSSTTLSGGEA 843

Query: 734 QRIKLATELQRNARGATLYVLDEPTTGLHPRDVDRLLSQLNHLVEAGHTVVVVEHEMRVV 793
           QRIKL  EL + A G T+Y+LDEPTTGLH  DV +L+  LN LVE G+TVVV+EH + V+
Sbjct: 844 QRIKLTRELSKRATGNTIYLLDEPTTGLHFHDVKKLIDVLNSLVEKGNTVVVIEHNLDVI 903

Query: 794 AQSDWVIDIGPGAGDLGGAVVASGTPQKVAKSKKSRTAAFLAKAL 838
             +D +ID+GP  G+ GG ++A+GTP+++AK K S T  FL   L
Sbjct: 904 KCADHIIDLGPEGGEFGGEIIATGTPEEIAKCKLSHTGKFLKNIL 948



 Score =  134 bits (336), Expect = 3e-35
 Identities = 61/111 (54%), Positives = 88/111 (79%)

Query: 20  VRGAREHNLRNVDVDIPRDALVVFTGVSGSGKSSLAFSTVYAEAQRRYFESVAPYARRLI 79
           ++GAREHNL+N+ + +PR+ L+V TGVSGSGKS++AF T+YAE QRRY ES++ YAR+ +
Sbjct: 6   IKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAYARQFL 65

Query: 80  DQVGVPDVDSIEGLPPAVALQQQRGTPSARSSVGSVTTLSSLIRMLYSRAG 130
             +  PDVDSIEGL PA+A+QQ+  + + RS+VG+VT +   +R+LY+R G
Sbjct: 66  GLMNKPDVDSIEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYARIG 116



 Score = 53.1 bits (126), Expect = 7e-11
 Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 17/154 (11%)

Query: 17  FVRVRGAREHNLRNVDVDIPRDALVVFTGVSGSGKSSLAFSTVYAEAQRRYFESVAPYAR 76
           F+++   R++NL++V V+IP     V TGVSGSGKS+L +  +Y   + +     +    
Sbjct: 609 FLKLSNCRQNNLKDVSVEIPTGVFNVITGVSGSGKSTLIYENLYPALKEKIKSDESVGEL 668

Query: 77  RLIDQV--GVPDVDSIE---GLPPAVALQQQRGTPSARSSVGSVTTLSSLIRMLY----- 126
              DQ+     +  ++E    +   V + Q     + RS+  + T +   IR ++     
Sbjct: 669 DFEDQLYENTKEKCNLEINSEIDKVVVIDQSPIGRTPRSNPATYTKVFDKIRQVFAETKE 728

Query: 127 SRAGSYPPGQPMLYAEDFSPNLPQGACPQCHGLG 160
           ++   Y PG+       FS N+  G C  C G G
Sbjct: 729 AKIKGYGPGR-------FSFNVKGGRCENCQGDG 755



 Score = 51.6 bits (122), Expect = 2e-10
 Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 11/118 (9%)

Query: 500 LTLQGVTRNNLKDLNVDFPLGCFTAVTGISGSGKSSLVSQALLELVSAGLGRVVENDEEP 559
           + ++G   +NLK++++  P      VTG+SGSGKS++   A   + + G  R VE     
Sbjct: 4   IIIKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTI---AFDTIYAEGQRRYVE----- 55

Query: 560 SLEDDAPQTSGGHIHAGLEHIRRL---VQVDQKPIGRTPRSNLATYTGLFDNVRKLFA 614
           SL   A Q  G      ++ I  L   + + QK   + PRS + T T ++D +R L+A
Sbjct: 56  SLSAYARQFLGLMNKPDVDSIEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYA 113