Pairwise Alignments

Query, 260 a.a., ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 244 a.a., amino acid ABC transporter, periplasmic amino acid-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 87.0 bits (214), Expect = 3e-22
 Identities = 63/218 (28%), Positives = 115/218 (52%), Gaps = 10/218 (4%)

Query: 34  VGATASGSPFTFLDIKS-NSIQGVMVDVAEAVGKAGGFTSQIEQTNFAALIPSLTSGKLD 92
           VG  A+  PF ++  +S + I+G  +++A+ + K  G T ++E   F +LI +L SGK+D
Sbjct: 30  VGTNAAFPPFEYVGGQSGDEIKGFDIELAKQIAKDAGKTLKVENMKFDSLIVALNSGKID 89

Query: 93  FISAGMLKTEERTKVVDFSAPVYAYGEGLIINADDNAAYPDLMPLKDQVVGVQAGTIFYD 152
           FI++GM  T ER   V+FS P Y   + L++N  DN +   L  +KD+   VQ G+   D
Sbjct: 90  FIASGMTITPERQASVNFSEPYYEATQVLLVN-KDNESIHTLDDIKDKHFAVQLGST-AD 147

Query: 153 QLNKLGIFKEIRTYDSIGEMVRDLSLGRIKAAVGD-QPVVAYQIRQKLFKGVKLAPDYTP 211
            ++K    +++  +++  E + +L  G++   + D +P   Y  +    K +KL  D+ P
Sbjct: 148 MMSK-KYTQKVTAFNTGFEAIMELKNGKVDLVLFDSEPAANYLAKNPDLKLIKL--DFPP 204

Query: 212 SNVGEVCLVVRKGDAQTLERLNTAIASIKADGTLDSIL 249
              G     V K   + L  +N  + ++K +G   +++
Sbjct: 205 EFYG---FAVSKQQPELLNSINHTLKNLKENGQYQALV 239