Pairwise Alignments

Query, 264 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 256 a.a., spermidine/putrescine ABC transporter permease PotC from Vibrio cholerae E7946 ATCC 55056

 Score = 75.9 bits (185), Expect = 8e-19
 Identities = 59/247 (23%), Positives = 114/247 (46%), Gaps = 7/247 (2%)

Query: 9   LQLLFTLLVCAFMLVPVLMSLLAGLTRNFFVGLSSGLTFDWLIQVWQAYS--PTVWLSLQ 66
           ++  F  LV  F+ +P+++ +      N F     G T  W   +    S     W S+ 
Sbjct: 5   IRFSFMSLVYLFLYLPIIVLIANSFNENKFGIKWGGFTTKWYHALMNNDSLMQAAWHSIN 64

Query: 67  LALACAVGVCVIGVPAAYALVRMNNRFSRAFEELMVLPVAMPGLASALALLLTYGQFGSF 126
           +A+  A    +IG   A AL R   +  +    ++ + +  P +  A++LL  +   G+ 
Sbjct: 65  VAVFSATAATLIGSLTAVALFRYQFKGKKVVSGMLFVVMMSPDIVMAISLLALFLVMGA- 123

Query: 127 RSSWLFILVGHVLFTLPFLVRPVMAVMQRQQLPLLEEAAASLGAGPIKRFFSVVVPNCRA 186
           +  +  +L+ H+ F LPF+V  V   +    + +LE AA  LGAG       +++P  + 
Sbjct: 124 KLGFFTLLIAHITFCLPFVVVTVYTRLNGFDVKMLE-AAKDLGAGEWVILKKIILPLAKP 182

Query: 187 GILAGVLMVVTLSLGEFNLTWMLHTPMTKTLPVGLADSYASARLEIASAYTLIFLLMIVP 246
            + AG L+  TLSL +  ++  +  P  + LP+ +   Y+  ++ I+     +  +M+V 
Sbjct: 183 AVAAGWLLSFTLSLDDVIISSFVTGPTYEILPLKI---YSMVKVGISPEVNALATVMLVV 239

Query: 247 LLIALQA 253
            L+ + A
Sbjct: 240 SLVLVVA 246