Pairwise Alignments

Query, 264 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 271 a.a., polyamine ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 83.6 bits (205), Expect = 4e-21
 Identities = 72/274 (26%), Positives = 128/274 (46%), Gaps = 19/274 (6%)

Query: 1   MKRSSLFVLQLLFTLLVCAFMLVPVLMSLLAGLTRNFFVGLSSGLTFDWLIQVW--QAYS 58
           MK+ S   + L F LL   F+  P+L+ ++     +  V +  G +  W  +++  Q   
Sbjct: 1   MKKLSFSSVMLWFGLL---FLYAPMLILVIYSFNESKLVTVWGGFSPKWYGELFKDQQIL 57

Query: 59  PTVWLSLQLALACAVGVCVIGVPAAYALVRMNNRFSR-AFEELMVLPVAMPGLASALALL 117
             VW SL++A   +    +IG  AA+ + R    +++     ++  P+ MP + + L+LL
Sbjct: 58  DAVWTSLRIAFYSSTMAVIIGTMAAFVMTRFKRSWAKLTLSNMITAPLVMPEVITGLSLL 117

Query: 118 LTYGQFGSF-----RSSWLFILVGHVLFTLPFLVRPVMAVMQRQQLPLLEEAAASLGAGP 172
           L +               + + + H  F   + V  V++   R+    +EEAA  LGA P
Sbjct: 118 LLFVHMADLLGWPKERGMVTVWIAHSTFCAAY-VAVVVSSRLRELDRSIEEAAMDLGATP 176

Query: 173 IKRFFSVVVPNCRAGILAGVLMVVTLSLGEFNLTWMLHTPMTKTLPVGLADSYASARLEI 232
           +K FF + VP     ++AG L+  +LSL +  ++     P   TLP+ +   ++S RL +
Sbjct: 177 LKTFFLITVPMISPALVAGWLLSFSLSLDDLVISSFASGPGATTLPMVV---FSSVRLGV 233

Query: 233 ASAYTLIFLLMI--VPLLIALQAISARLSRGERR 264
           +     +  L+I  V L+  L    AR  R E+R
Sbjct: 234 SPKINALATLIILCVSLIAFLSWYMAR--RAEKR 265