Pairwise Alignments

Query, 531 a.a., peptidoglycan-binding protein from Pseudomonas simiae WCS417

Subject, 524 a.a., murein L,D-transpeptidase from Vibrio cholerae E7946 ATCC 55056

 Score =  163 bits (413), Expect = 1e-44
 Identities = 123/386 (31%), Positives = 185/386 (47%), Gaps = 30/386 (7%)

Query: 155 PPTRDPNVEVLAFAAQGLQDMAQAFDQARPSADLYRSLRNAY---STVRQQPLPHWDPVA 211
           PP+ +   ++    A G Q +A+  D+  P    Y+ L  AY   S++    +  ++ + 
Sbjct: 141 PPSEE--AQLALHMAIGNQSLARLMDEYTPQDPAYQQLLQAYQSLSSIEFNEVALYEQME 198

Query: 212 SGPLLRPGMEDPRVPELARRLISGGYLANAPSGKQYRD------ELVKAVKAFQLSHSLQ 265
              L RPG        L +RL     L N  +     D       L K +K FQ  H LQ
Sbjct: 199 R--LKRPGDPLSHREALVQRLA----LVNLDTTSILNDVAYYDASLEKPIKQFQKMHGLQ 252

Query: 266 ADGVIGAGTVAELNISPAVRREQLRINLERFR-WLAQDLEPEGVLVNVAAAQLSVYQSGI 324
            DGVIG  T+  LN S   R   L +N ER R W  Q  +   ++VNV    +  + +G 
Sbjct: 253 TDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQ--QDSMIVVNVPGFDMKYWDAGR 310

Query: 325 PVWQTRLQVGRAERQTPLLKSRITRLTLNPTWTIPPTIMREDKLPAIRLNPEYLRQQNLQ 384
            V+++++ VG+  R TP++ +++  L +NPTW +P  IM ED LP ++ + EYL   +++
Sbjct: 311 EVFESKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLANHHME 370

Query: 385 VLDAEGHP--LTAEQVDW--ARPGNI--LLRQEAGPRNPLGKIVMRFPNPYSVYLHDTPS 438
           ++     P  +    +DW    P      LRQ+AG +N LG      PN  ++YLHDTPS
Sbjct: 371 IIRGWSDPEVIDPALIDWEAVEPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLHDTPS 430

Query: 439 QPLFTKGPRAFSSGCVRVEQPLLLRDLLVSPAERARTDELLATGLTHEFRLATPVPVLLS 498
           + LF    RAFSSGC+RVE        L++       D  ++   T    L   +PV + 
Sbjct: 431 KHLFNNASRAFSSGCIRVENAEKFAQTLLANQGITLDDFPVS---TQAIALKKRIPVHII 487

Query: 499 YWTVEVNREGGLVYAPDIYGRDLVLM 524
           Y TV    EG L Y  DIY  D + +
Sbjct: 488 YQTVWY-EEGVLHYRDDIYHYDALAL 512