Pairwise Alignments

Query, 267 a.a., diaminopimelate epimerase from Pseudomonas simiae WCS417

Subject, 275 a.a., diaminopimelate epimerase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  148 bits (374), Expect = 1e-40
 Identities = 94/270 (34%), Positives = 143/270 (52%), Gaps = 10/270 (3%)

Query: 3   LPFVKMHAHGDDFIIIDRRGLHDPITAKVARQLGNRHTGIGFNQLAVLLDC--DDAAARI 60
           + F KMH  G+DF+++D    +   + +  R+L +R+ G+GF+QL ++      D     
Sbjct: 2   IQFTKMHGLGNDFMVVDGITQNVFFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFHY 61

Query: 61  KFWNPNGTLLATCGSATRGVADRLMHEAGTDSVVLR--TDRGLLTCARAAGRQISVNMGE 118
           + +N +G  +  CG+  R  A  + ++  T+   +R  T  G +T        ++VNMG 
Sbjct: 62  RIFNADGGEVENCGNGARCFARFVRNKGLTNKNKIRVSTSAGKMTLRLERDGTVTVNMGV 121

Query: 119 PSLDWSAVPLA--EAMDTLTLPIDGNPAAC---SMGNPHCTFFVEDLTAVDVATVGPALE 173
           P L+ S +P    +A  T  L        C   SMGNPHC   VED+   +VA +G  L 
Sbjct: 122 PVLEPSQIPFKAKKAEKTYLLQTPQQTFLCGAASMGNPHCVLDVEDVANANVAEIGALLT 181

Query: 174 IHPLFPAKTNVHFVQVLDRGHIRLRIWERGGGVPLGSGSCCCGAVVNGIRRGLLDATVQV 233
            H  FP   NV F+QV++ GHI+LR++ERG    L  G+  C AVV G  +G LD  VQV
Sbjct: 182 KHERFPRGVNVGFMQVVNAGHIKLRVYERGAAETLACGTGACAAVVVGQIQGKLDQQVQV 241

Query: 234 HCDGGTVTVHWAGEGAVV-LTGSVEPVMQG 262
              GG++T++W GEG  + +TG  + V  G
Sbjct: 242 DLPGGSLTINWEGEGKPLWMTGPAQHVYDG 271